GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000418-TA|BGIBMGA000418-PA|IPR003534|Major royal jelly
protein, IPR000437|Prokaryotic membrane lipoprotein lipid attachment
site
         (310 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0440 + 17192122-17192691,17193947-17194912                       30   2.1  
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510...    29   6.3  
06_03_0861 - 25486801-25486997,25487334-25487904,25488874-254889...    28   8.3  

>08_02_0440 + 17192122-17192691,17193947-17194912
          Length = 511

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 87  VVDVDQNTCDDAFAYIPDLGGYGVVVYSLKQNDSWRVAHHFF 128
           V+ V  + C+      PDL  Y ++V+ L  N  WR A  FF
Sbjct: 413 VMQVWNDMCESTVG--PDLNSYTLLVHGLCDNKKWREACQFF 452


>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
            27353739-27354606,27354784-27355957
          Length = 1790

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 105  LGGYGVVVYSLKQNDS---WRVAHHFFHFEPL--AGSYRVGGVEFHWTDGVFALALSEPR 159
            L GYG++ Y L  +DS       H  F    L   GS+  GG+  H   G  ALA   PR
Sbjct: 1008 LSGYGLIAYQLGNHDSVLNHNEQHEKFDAHRLNSTGSHPKGGLA-HKLSGFRALAAGAPR 1066


>06_03_0861 -
           25486801-25486997,25487334-25487904,25488874-25488976,
           25489281-25489376,25490319-25490449
          Length = 365

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 26  WKEVDYEWNTPAERENAIKSGAGNQIVRPSIVIFDLKTDQLLHRYF 71
           WKEV+Y               A  +IVR ++ +  + T+  L  YF
Sbjct: 116 WKEVEYFKEYQRRLRRHAGRAAARRIVRDALYVVSIGTNDFLENYF 161


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.138    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,680,959
Number of Sequences: 37544
Number of extensions: 428952
Number of successful extensions: 769
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 768
Number of HSP's gapped (non-prelim): 3
length of query: 310
length of database: 14,793,348
effective HSP length: 82
effective length of query: 228
effective length of database: 11,714,740
effective search space: 2670960720
effective search space used: 2670960720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)