GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000418-TA|BGIBMGA000418-PA|IPR003534|Major royal jelly
protein, IPR000437|Prokaryotic membrane lipoprotein lipid attachment
site
         (310 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040641-2|AAB94946.1|  311|Caenorhabditis elegans Hypothetical ...    36   0.049
AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical ...    31   1.4  
Z73972-4|CAA98260.1|  666|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z35603-1|CAA84673.1| 1017|Caenorhabditis elegans Hypothetical pr...    28   7.4  
X75564-1|CAA53244.1| 1017|Caenorhabditis elegans myosin IA protein.    28   7.4  
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    28   9.7  
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans Hypothetical p...    28   9.7  
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans Hypothetical p...    28   9.7  

>AF040641-2|AAB94946.1|  311|Caenorhabditis elegans Hypothetical
           protein D1069.1 protein.
          Length = 311

 Score = 35.5 bits (78), Expect = 0.049
 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 22  LRFAWKEVDYEWNTPAERENAIKSGAGNQIVRPSIVIFDLKTDQLLHRYFFKLEDMKEDS 81
           +R  W EV++ W T    +  I +   +Q   P+   + ++T ++  + FF   D+ ++ 
Sbjct: 231 IRNTWDEVNFSWFTKYSPKAVIINFFSDQSAMPN-QFWGVQTGKIKKKLFFSEIDLDKNP 289

Query: 82  FFANIVVDVDQN 93
            FANI+V + +N
Sbjct: 290 IFANILVLIWEN 301


>AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical
           protein F52C12.4 protein.
          Length = 1635

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/72 (25%), Positives = 27/72 (37%)

Query: 158 PRENGFRTMFFHAFSSTKEFCVSTELLRNYTHIDKQEAFHDFKLLGDRGQGTQASASFYD 217
           P +  F T      + TK +  +      YT    ++      L  D G   + S S  D
Sbjct: 280 PPDRSFSTFVLTDENGTKFYGSAVTFYEKYTKQLSEDQLEQLDLKSDEGGTVEDSGSNND 339

Query: 218 PNTQVLFYGQVN 229
           P   +LFY  V+
Sbjct: 340 PADDILFYKNVS 351


>Z73972-4|CAA98260.1|  666|Caenorhabditis elegans Hypothetical
           protein F15H10.7 protein.
          Length = 666

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 90  VDQNTCDDAFAYIPDLGGYGVVVYSLKQNDSWRVAHHFFHF 130
           +  NT  +  A +    G GV  +S + N+SW +A   F F
Sbjct: 235 IHDNTYGNLLAILTGKRGVGVKEFSTEINESWHIAFDEFDF 275


>Z35603-1|CAA84673.1| 1017|Caenorhabditis elegans Hypothetical
           protein T02C12.1 protein.
          Length = 1017

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/40 (35%), Positives = 17/40 (42%)

Query: 185 RNYTHIDKQEAFHDFKLLGDRGQGTQASASFYDPNTQVLF 224
           RN    DK   F +FK+    G  T +   F D N   LF
Sbjct: 493 RNLKQSDKSMGFEEFKITHYAGDVTYSVMGFMDKNKDTLF 532


>X75564-1|CAA53244.1| 1017|Caenorhabditis elegans myosin IA protein.
          Length = 1017

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/40 (35%), Positives = 17/40 (42%)

Query: 185 RNYTHIDKQEAFHDFKLLGDRGQGTQASASFYDPNTQVLF 224
           RN    DK   F +FK+    G  T +   F D N   LF
Sbjct: 493 RNLKQSDKSMGFEEFKITHYAGDVTYSVMGFMDKNKDTLF 532


>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
           protein precursor protein.
          Length = 2272

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 34  NTPAER--ENAIKSGAGNQIVRPSIVIFDLKTDQLLHRY 70
           NTPA+R  EN   S  GN +VR ++  +  +T ++L  +
Sbjct: 294 NTPAQRIGENLSTSNVGNNVVRETVREYCEETGEILEDF 332


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans Hypothetical
           protein F44E2.2a protein.
          Length = 2175

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 34  NTPAER--ENAIKSGAGNQIVRPSIVIFDLKTDQLLHRY 70
           NTPA+R  EN   S  GN +VR ++  +  +T ++L  +
Sbjct: 197 NTPAQRIGENLSTSNVGNNVVRETVREYCEETGEILEDF 235


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans Hypothetical
           protein F44E2.2b protein.
          Length = 2186

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 34  NTPAER--ENAIKSGAGNQIVRPSIVIFDLKTDQLLHRY 70
           NTPA+R  EN   S  GN +VR ++  +  +T ++L  +
Sbjct: 208 NTPAQRIGENLSTSNVGNNVVRETVREYCEETGEILEDF 246


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.138    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,430,347
Number of Sequences: 27539
Number of extensions: 385590
Number of successful extensions: 677
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 672
Number of HSP's gapped (non-prelim): 8
length of query: 310
length of database: 12,573,161
effective HSP length: 81
effective length of query: 229
effective length of database: 10,342,502
effective search space: 2368432958
effective search space used: 2368432958
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)