Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000417-TA|BGIBMGA000417-PA|undefined
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 33 0.88
03_05_0096 + 20754478-20754584,20755548-20755677,20756212-207562... 32 2.0
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047... 31 2.7
05_06_0116 - 25719030-25719458,25720138-25720301,25720390-257206... 31 3.6
09_01_0007 + 212984-213949 30 6.2
09_01_0006 - 206409-207464 30 6.2
04_04_1247 - 32043776-32043880,32044296-32044505,32044595-320451... 30 6.2
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 33.1 bits (72), Expect = 0.88
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 177 NYTENNTFPSQEIYQNYANMPMITDTHETTADGDTKSNNPDKNIQNQNSVNKFNTNENNA 236
N+T ++ Y P+I E TA + K+ +++ + VN F NA
Sbjct: 421 NFTNPGVLGDATYFRRYYEAPIICG-REPTASAEEKNLGSERSAELSAKVNLFILRRTNA 479
Query: 237 VQNTHNPIKFQKVV 250
+ + H P K +VV
Sbjct: 480 LLSNHLPPKIVEVV 493
>03_05_0096 +
20754478-20754584,20755548-20755677,20756212-20756268,
20756741-20756794,20757610-20758287
Length = 341
Score = 31.9 bits (69), Expect = 2.0
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 65 SADYTGFSSAGVNQESSTRLYAPAFPTAL------DATDFGNNFATQAFDGVNDNDGQKS 118
+AD+ G ++ + R AP + + D T FG++ +A D +++G +
Sbjct: 73 AADWLGKDGGKIDGREANRTLAPIYVRSKGKYLMEDKTGFGDSM--EASDMDIEDEGNED 130
Query: 119 GVLQYNPNNFNYFNSQTFENSNDDHRNIGTVELYS----EDRENPIYGTKIHKGKIREPT 174
G + + N FNS E ++ D + + TV++Y + ++ + KG IRE
Sbjct: 131 GTNESDHENI--FNSPATEFASVDEQLVFTVDMYDPRNWDKLDHKARDILVEKGPIREEN 188
Query: 175 -RFNYTENNT-FP 185
F +N T FP
Sbjct: 189 IEFPLDDNLTHFP 201
>07_03_1530 + 27502546-27502671,27503487-27503561,27504670-27504746,
27505576-27507522,27508478-27508946,27509898-27510079,
27510746-27511208,27511295-27511691,27511810-27511937,
27512106-27512273,27512452-27512559,27512830-27512838
Length = 1382
Score = 31.5 bits (68), Expect = 2.7
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 507 SIPKRNKYHHYHSTPYENKPNYWPYGHHNPYKSSRPKDWNNEEPNRFKSE 556
S+P N +H P+ PN +PY P ++++P + N P R + E
Sbjct: 1198 SVPPPNNAYHLQPPPHPPFPNQYPY-PPEPQQNTQPWNCNPSYPERHQYE 1246
>05_06_0116 -
25719030-25719458,25720138-25720301,25720390-25720643,
25720727-25720782,25721032-25721169,25721315-25721421,
25721502-25721681,25721757-25721852,25721926-25722007,
25722084-25722425,25722666-25722695,25722788-25722880,
25722963-25723040,25723122-25723222,25723833-25724058,
25724647-25724760,25724855-25725009,25725515-25725554
Length = 894
Score = 31.1 bits (67), Expect = 3.6
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 72 SSAGVNQESSTRLYAPAFPTALDATDFGNNFATQAFDGVND 112
S A VN++ Y PT LD DF +N + F G D
Sbjct: 818 SYAEVNRDGGPTSYTDITPTCLDEADFEDNASEDGFSGGTD 858
>09_01_0007 + 212984-213949
Length = 321
Score = 30.3 bits (65), Expect = 6.2
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 492 KKHPHFSDDLDDEIVSIPK-RNKYHHYHSTPYENKPNYWPYGHHNP 536
KK H D D I P R + H +H+T ++ WP H P
Sbjct: 77 KKVSHLRDRYIDHIYKPPPARRRPHQHHTTLFDLSRKVWPQFQHPP 122
>09_01_0006 - 206409-207464
Length = 351
Score = 30.3 bits (65), Expect = 6.2
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 492 KKHPHFSDDLDDEIVSIPK-RNKYHHYHSTPYENKPNYWPYGHHNP 536
KK H D D I P R + H +H+T ++ WP H P
Sbjct: 77 KKVSHLRDRYIDHIYKPPPARRRPHQHHTTLFDLSRKVWPQFQHPP 122
>04_04_1247 -
32043776-32043880,32044296-32044505,32044595-32045101,
32045362-32045583,32046054-32046184,32046737-32047745,
32047830-32047904,32047995-32048066,32048153-32048328,
32048494-32048646,32048739-32049234
Length = 1051
Score = 30.3 bits (65), Expect = 6.2
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 51 GFNDVGSYDGFMPTSADYTGFSSA--GVNQESSTRLYAPAFPTALDATDFG-NNFATQA 106
GF +Y MPTSA TG SA G+N S R++ P+ P +FG N TQ+
Sbjct: 198 GFQTSSAYGIEMPTSAMSTGGVSAYGGLN---SHRIFPPSVPYNNSVNNFGVNGLGTQS 253
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.130 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,326,172
Number of Sequences: 37544
Number of extensions: 838740
Number of successful extensions: 1439
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1438
Number of HSP's gapped (non-prelim): 7
length of query: 790
length of database: 14,793,348
effective HSP length: 88
effective length of query: 702
effective length of database: 11,489,476
effective search space: 8065612152
effective search space used: 8065612152
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 64 (29.9 bits)
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