GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000417-TA|BGIBMGA000417-PA|undefined
         (790 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    28   0.28 
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           25   2.0  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    25   2.7  
AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase l...    24   4.6  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   6.1  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 27.9 bits (59), Expect = 0.28
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 226 VNKFNTNENNAVQNTHNPIKFQKVVDFTNLKPHY 259
           VN+ NT  NN  Q TH  + FQ +V +  L PH+
Sbjct: 204 VNENNTTVNNICQATHKQL-FQ-LVQWAKLVPHF 235


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 130 YFNSQTFENSNDDHRNIGTVELYSEDRENPIYGTKIHKGKIREPTRFNYTENNTFP 185
           +  S   +N N +H      E+Y   +E PIY  +  +  I +P   N+ +N+  P
Sbjct: 24  FLASDCDKNQNTEHNYTHNNEMYHSVKEEPIY--ESCRFSINQP-YLNHFDNSVTP 76


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 192 NYANMPMITDTHETTADGDTKSNNPDKNIQNQNSV 226
           NYA+  +  DT  T +DGDT     DK   ++ S+
Sbjct: 605 NYADDRVEQDTSGTCSDGDTFCGIKDKLYPDRRSM 639


>AF260820-1|AAG02018.1|  139|Tribolium castaneum alpha-esterase like
           protein E1 protein.
          Length = 139

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 302 KSGSNINGKYNFNKHININDDNAIFSNHYSLN 333
           K G    G++ F K++ +  +N +  N Y+ N
Sbjct: 33  KEGDPCYGRHFFKKNLIVGSENCLVLNVYTKN 64


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 182 NTFP--SQEIYQNYANMPMITDTHETTADGDTKSNNPDKNIQNQNSVNKFNTNENNAVQN 239
           N FP  S +  Q   N P  ++      +G+  +N+  KN  N N  N  +  +    +N
Sbjct: 352 NGFPKRSSDEQQWRNNQPSTSNNRWHNNNGNNSNNHWRKNNPNDNRNNTSSRAQGETSRN 411

Query: 240 THN 242
           + N
Sbjct: 412 SKN 414


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.130    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,653
Number of Sequences: 317
Number of extensions: 8937
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 5
length of query: 790
length of database: 114,650
effective HSP length: 62
effective length of query: 728
effective length of database: 94,996
effective search space: 69157088
effective search space used: 69157088
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 47 (23.0 bits)