Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000416-TA|BGIBMGA000416-PA|IPR009533|Protein of unknown
function DUF1151
         (194 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    31   0.11 
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   2.4  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   3.2  
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    26   3.2  
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    25   7.3  
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe...    25   9.7  

>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 8/72 (11%)

Query: 71  AGSESLIAPRRLPNPCLESPQRMDLHRELLFNQRIGKNVLNQ----KSELEKALSKHKEK 126
           +GS +L+A RR   PC    +R+  H++   N  I KN+LN     +    +A  K  +K
Sbjct: 6   SGSLTLLAVRRFCGPC----RRLHYHKDNPNNINIAKNLLNNNIQARCSTNEASWKLAQK 61

Query: 127 QILNQMREQQHK 138
           ++  ++RE + K
Sbjct: 62  ELDLKIREYEQK 73


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/25 (40%), Positives = 19/25 (76%)

Query: 112  QKSELEKALSKHKEKQILNQMREQQ 136
            +K++ +K L+  K+K+I+ Q R+QQ
Sbjct: 1275 EKTQEKKRLALEKQKKIMQQFRDQQ 1299


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 63  MVQEGESGAGSESLIAPRRLPNPCLESPQRMDLHRELLFNQRI--GKNV-LNQKSE-LEK 118
           ++ E    A   +L    R P P L++ +R  LHR+LL N       NV L+  S+    
Sbjct: 213 LIDEESKLASLRNLNINDRPPLPVLKNSERNLLHRQLLSNHPFFSQNNVSLSTNSKNYST 272

Query: 119 ALSKHKEKQILNQMREQQHK 138
             +K +    L Q R+Q H+
Sbjct: 273 DFTKIQSDSSLLQNRQQNHR 292


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/27 (37%), Positives = 19/27 (70%)

Query: 113 KSELEKALSKHKEKQILNQMREQQHKD 139
           ++E+E+ LS   EK +L+ MR+  H++
Sbjct: 152 QNEVEQTLSPKDEKDLLDPMRDYIHRE 178


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 84  NPCLESPQRMDLHRELLFNQRIGKNVLNQKSELEKALSKHKEKQILN 130
           NP +   Q+++L +EL       K   NQK + +   SK+  +++ N
Sbjct: 232 NPVISKAQQLELIQELKHEGSRLKQAANQKRKSKTVSSKNNFQRLQN 278


>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 55  EANLGAVDMVQEGESGAGSESLIAPRRLPNPCLESPQRMDLHRELLFNQRIGKNVLNQKS 114
           EAN GAV  V   ++ A    L A   +P P  E  +R ++ +++  +     N   Q  
Sbjct: 195 EANTGAVKRVGRSDAYATEFDLEAEEYVPMPKGEVHKRKEIVQDVTLHDLDIANARPQGG 254

Query: 115 E----LEKALSKHKEKQILNQMREQQHK 138
           +    +   L K K+ +I +++R + +K
Sbjct: 255 QDIMSMMGQLMKPKKTEITDKLRGEINK 282


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.130    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 675,603
Number of Sequences: 5004
Number of extensions: 23818
Number of successful extensions: 56
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 6
length of query: 194
length of database: 2,362,478
effective HSP length: 69
effective length of query: 125
effective length of database: 2,017,202
effective search space: 252150250
effective search space used: 252150250
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 51 (24.6 bits)