Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000416-TA|BGIBMGA000416-PA|IPR009533|Protein of unknown
function DUF1151
         (194 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34410| Best HMM Match : Remorin_C (HMM E-Value=1.5)                 33   0.20 
SB_47804| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)                 32   0.36 
SB_46988| Best HMM Match : HEAT (HMM E-Value=8.6e-06)                  30   1.1  
SB_6219| Best HMM Match : REJ (HMM E-Value=8.1)                        28   4.4  
SB_56032| Best HMM Match : zf-CCHC (HMM E-Value=0.00047)               28   5.8  
SB_55915| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_52308| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_44585| Best HMM Match : DeoC (HMM E-Value=3.7e-13)                  27   7.7  

>SB_34410| Best HMM Match : Remorin_C (HMM E-Value=1.5)
          Length = 303

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 3/108 (2%)

Query: 27  LKDSSHQLLSVDALSGGGGVDL-VSTLVSEANLGAVDMVQEGESGAGSESLIAPRRLPNP 85
           L  ++  L+S    S   GV   +S  VS+ N  A D++ +G+  A       PRRL   
Sbjct: 47  LLKTARSLISAQRSSAKNGVTPEMSAFVSKCNAAAYDLIIDGKQTADGGHAKVPRRLAK- 105

Query: 86  CLESPQRMDLHRELLFNQRIGKNVLNQKSELEKALSKHKEKQILNQMR 133
            +E+     +   L    ++  N + Q  +++K  S        N  R
Sbjct: 106 -IEAAPTFTMEMLLEEQAQVESNRIRQLEKIKKTASSSTRSSDANARR 152


>SB_47804| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)
          Length = 402

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 3/91 (3%)

Query: 49  VSTLVSEANLGAVDMVQEGESGAGSESLIAPRRLPNPCLESPQRMDLHRELLFNQRIGKN 108
           +S  VS+ N  A D++ +G+  A       PRRL    +ES   + +   L    ++  N
Sbjct: 169 MSAFVSKCNAAAYDLILDGKQTADGGHAKVPRRLAR--IESAPTLTMEMLLEKQTQVENN 226

Query: 109 VLNQ-KSELEKALSKHKEKQILNQMREQQHK 138
            + Q + + +KA ++ +     ++   + HK
Sbjct: 227 RIRQLEKKKKKASARSRSSDASDRRASRSHK 257


>SB_46988| Best HMM Match : HEAT (HMM E-Value=8.6e-06)
          Length = 1231

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 95   LHRELLFNQRIGKNVLNQKSELEKALSKHKEKQILNQMREQQ 136
            L ++++  QR  + +L QK E E+ + + K+KQ+  Q++EQ+
Sbjct: 968  LRKKIMKEQRELEKMLQQK-EKERQVERQKQKQLQEQLQEQE 1008


>SB_6219| Best HMM Match : REJ (HMM E-Value=8.1)
          Length = 576

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 83  PNPCLESPQRMDLHRELLFNQRIGKNV 109
           PNPC+ SPQ  + H++   N+ +  +V
Sbjct: 394 PNPCISSPQSKNSHQDKENNRNMASSV 420


>SB_56032| Best HMM Match : zf-CCHC (HMM E-Value=0.00047)
          Length = 632

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 98  ELLFNQRIGKNVLNQKSELEKALSKHKE----KQILNQMREQQHKD 139
           E+L    I +    Q + +E+ L +  E    KQI N  R+QQHK+
Sbjct: 173 EILDEAAIDEESSAQAAAIERKLKEESESQRVKQITNHTRDQQHKE 218


>SB_55915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 13/75 (17%)

Query: 77  IAPRRLPNPCLES-PQRMDLHRELLFNQ------RIGKNVLNQKSE-LEKALSKHKEKQI 128
           IAP RL N C  S P R D  R++ F +       +GK      +E +E+ + +H + Q+
Sbjct: 220 IAPNRL-NHCTSSVPPRFDNDRQITFKEACAGTAMLGKEAAMACTEAIEEVIGEHYDSQL 278

Query: 129 LNQMRE----QQHKD 139
              + E    ++HKD
Sbjct: 279 RELLSEEGAMEKHKD 293


>SB_52308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1407

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 74  ESLIAPRRLPNPCLESPQRMDLHRELLFNQRIGKNVLNQKSELEKALSKHKEK 126
           +SL   R+  N  ++        + + F   + +N+ N+K   EK+   HKEK
Sbjct: 160 QSLAVIRQYFNVVVKEEPEAQPSQSVSFTNELLENIRNRKKNKEKSKKDHKEK 212


>SB_44585| Best HMM Match : DeoC (HMM E-Value=3.7e-13)
          Length = 473

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 3/100 (3%)

Query: 23  FEIVLKDSSHQLLSVDALSGGGGVDL-VSTLVSEANLGAVDMVQEGESGAGSESLIAPRR 81
           F+  L  ++  L+S       G V   +S  VS  N  A D++ +G+  A       PRR
Sbjct: 213 FDTELLKTARSLISAKRGGVKGSVTPEMSAFVSNCNAAAYDLILDGKQTADGGHAKVPRR 272

Query: 82  LPNPCLESPQRMDLHRELLFNQRIGKNVLNQKSELEKALS 121
           L    +E+     +   L    ++  N + Q  + +K  S
Sbjct: 273 LAK--IEAAPTFTMEMLLEKQAQVENNRIRQLEKKKKKAS 310


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.311    0.130    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,925,762
Number of Sequences: 59808
Number of extensions: 169555
Number of successful extensions: 433
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 8
length of query: 194
length of database: 16,821,457
effective HSP length: 78
effective length of query: 116
effective length of database: 12,156,433
effective search space: 1410146228
effective search space used: 1410146228
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 58 (27.5 bits)