Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000416-TA|BGIBMGA000416-PA|IPR009533|Protein of unknown
function DUF1151
         (194 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01810.1 68416.m00123 expressed protein                             29   1.6  
At1g70950.1 68414.m08185 expressed protein                             27   6.3  
At5g63680.1 68418.m07994 pyruvate kinase, putative similar to py...    27   8.3  
At5g62100.2 68418.m07795 BAG domain-containing protein similar t...    27   8.3  
At3g05450.1 68416.m00597 hypothetical protein                          27   8.3  
At1g77122.1 68414.m08984 expressed protein                             27   8.3  

>At3g01810.1 68416.m00123 expressed protein
          Length = 921

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 6/103 (5%)

Query: 30  SSHQLLSVDALSGGGGVDLVSTLVSEANLGAVDMVQEGESGAGSESLIAPRRLPNPCLES 89
           SS   L  +A +GG   + VS L++E      ++    +    S S +    + +  LES
Sbjct: 170 SSMNSLKDEAKNGG---ESVSALMNEEYYKEAEIASITDDDISSHSSLT---VSSSTLES 223

Query: 90  PQRMDLHRELLFNQRIGKNVLNQKSELEKALSKHKEKQILNQM 132
                +  E   ++RI KN      E  K++S+ +++QI +Q+
Sbjct: 224 NGGFSVRTEEEEHERINKNPRGNGHERSKSVSESRQRQIADQI 266


>At1g70950.1 68414.m08185 expressed protein
          Length = 478

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 30  SSHQLLSVDALSGGGGVDLVSTLVSEANLGAVDMVQE 66
           +S +++ +D   GGG    V+ LV   NLG  +M QE
Sbjct: 160 NSDEVIELDEEEGGGDHGRVADLVECENLGPPEMPQE 196


>At5g63680.1 68418.m07994 pyruvate kinase, putative similar to
           pyruvate kinase, cytosolic isozyme [Glycine max]
           SWISS-PROT:Q42806
          Length = 510

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 50  STLVSEANLGAVDMVQ-EGESGAGSESLIAPRRLPNPCLESPQRMD 94
           +T V+ A L   D V   GES AG+   IA + +   C+E+   +D
Sbjct: 315 ATDVANAVLDGTDCVMLSGESAAGAYPEIAVKTMAKICIEAESSLD 360


>At5g62100.2 68418.m07795 BAG domain-containing protein similar to
           BAG domain containing proteins (At5g07220, At5g52060)
          Length = 285

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 17  KSSEKCFEIVLKDSSHQLLSVDALSGGGGVDLVSTLVSE 55
           K  EK  E +++   +QL+ +DA+SG G V L   +  E
Sbjct: 159 KVEEKNLENLMEMLMNQLVKLDAISGDGDVKLKKKMQEE 197


>At3g05450.1 68416.m00597 hypothetical protein
          Length = 433

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 13  KTSWKSSEKCFEIVLKDSSHQLLSVDAL---SGGGGVDLVSTLVSEANLGAVDMVQEGES 69
           K +W ++EK + I  + S  ++ S+  +   S  G     S+   E   G+    Q  ES
Sbjct: 183 KAAWSAAEKTYPIFCRPSESKVYSIIEMAPKSSDGETKYGSSSDGEIKCGSSSENQSTES 242

Query: 70  ---GAGSE-SLIAPRRLPNPCLESPQRMD 94
                G E S++  R++    LE P   D
Sbjct: 243 MEITTGDESSMLGKRKVETTDLEDPDEND 271


>At1g77122.1 68414.m08984 expressed protein 
          Length = 323

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 29  DSSHQLLSVDALSGGGGVDLVSTLVSEANLGAVDMVQEGESGAGSESLIAPRRLPNPCLE 88
           +S  +L + D   GGGG+ L  TL  +  L     V+  ES  G   + A + LPN  ++
Sbjct: 124 ESEEELYAGDG-GGGGGIKLAGTLWDKVALALA--VKVCESFDGDLGIYAFKTLPNSTIQ 180


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.311    0.130    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,686,900
Number of Sequences: 28952
Number of extensions: 139066
Number of successful extensions: 321
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 319
Number of HSP's gapped (non-prelim): 6
length of query: 194
length of database: 12,070,560
effective HSP length: 77
effective length of query: 117
effective length of database: 9,841,256
effective search space: 1151426952
effective search space used: 1151426952
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 57 (27.1 bits)