GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000416-TA|BGIBMGA000416-PA|IPR009533|Protein of unknown
function DUF1151
         (194 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr...    28   3.8  
AF036702-13|AAB88379.2|  648|Caenorhabditis elegans Hypothetical...    28   3.8  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    27   8.7  

>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
            F54E4.1 protein.
          Length = 2948

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 12   LKTSWKSSEKCFEIVLKDSSHQLLSVDALSGGGGVDLVSTLVSEANLGAVDM 63
            LK  W   EK  E + + ++   +    +  G G++  +TL S+  +GA D+
Sbjct: 1963 LKLDWSDEEKDDEEIEEVTNENTVDAPVIQNGAGIENAATLQSQL-VGATDI 2013


>AF036702-13|AAB88379.2|  648|Caenorhabditis elegans Hypothetical
           protein F33D4.6b protein.
          Length = 648

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/44 (27%), Positives = 27/44 (61%)

Query: 88  ESPQRMDLHRELLFNQRIGKNVLNQKSELEKALSKHKEKQILNQ 131
           ESP+R +  ++ + N     + + Q+S   + L+K +E+++LN+
Sbjct: 458 ESPKRQETTQQEVQNDTPMNDAIEQRSSKVQMLTKEQEEELLNK 501


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/56 (23%), Positives = 32/56 (57%)

Query: 84   NPCLESPQRMDLHRELLFNQRIGKNVLNQKSELEKALSKHKEKQILNQMREQQHKD 139
            +P  ++  ++ L+R++  +Q  GK+ ++Q + +EK  +  +   IL+ M  +  K+
Sbjct: 3664 DPTDKNAWQLSLYRKIGKSQMRGKDEMSQDAVIEKIFNMGQVSAILHTMTSRMEKE 3719


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.311    0.130    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,704,836
Number of Sequences: 27539
Number of extensions: 133572
Number of successful extensions: 349
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 3
length of query: 194
length of database: 12,573,161
effective HSP length: 78
effective length of query: 116
effective length of database: 10,425,119
effective search space: 1209313804
effective search space used: 1209313804
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 57 (27.1 bits)