Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000415-TA|BGIBMGA000415-PA|IPR009091|Regulator of
chromosome condensation/beta-lactamase-inhibitor protein II,
IPR000408|Regulator of chromosome condensation, RCC1
         (993 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    25   3.4  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    25   3.4  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       24   4.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   7.8  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 418 HYHSAAVDAGGRLLTWGWGVHGQLGLGNIDDQWTPQL 454
           H  + A  A   + +W  G H    +G     W PQ+
Sbjct: 13  HQQAVAAPANAPMHSWYAGYHQGAQMGPEQQMWEPQM 49


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 418 HYHSAAVDAGGRLLTWGWGVHGQLGLGNIDDQWTPQL 454
           H  + A  A   + +W  G H    +G     W PQ+
Sbjct: 13  HQQAVAAPANAPMHSWYAGYHQGAQMGPEQQMWEPQM 49


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 943 ELERVLRKYMESNATTMITAILYSKDCSEYSEILSPKF 980
           EL R+ R Y   N  + +  +   +DC  Y   +S  F
Sbjct: 303 ELGRIFRAYCRENHASWVNHLSNIEDCLNYVPHISTGF 340


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 786 YHNNAYSECLRLMLENLKRGPQNDCF 811
           Y NN  S    + +ENLK  P N  F
Sbjct: 427 YLNNEGSLVYNVQIENLKTTPDNTTF 452


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.135    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,274
Number of Sequences: 317
Number of extensions: 8998
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 5
length of query: 993
length of database: 114,650
effective HSP length: 64
effective length of query: 929
effective length of database: 94,362
effective search space: 87662298
effective search space used: 87662298
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)