Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000415-TA|BGIBMGA000415-PA|IPR009091|Regulator of
chromosome condensation/beta-lactamase-inhibitor protein II,
IPR000408|Regulator of chromosome condensation, RCC1
         (993 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    26   1.7  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     25   3.0  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         24   5.3  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    24   5.3  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    24   5.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   9.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 294 QDIHLEVTQPPSDTWKNQVFTPRRSLTCGLAH 325
           Q +H    + P +T  + VFT R + TC L+H
Sbjct: 292 QPVH-SAYKAPEETIISSVFTTRHNATCYLSH 322


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 304 PSDTWKNQVFTPRRSLTCGLAH 325
           P +T  + VFT R + TC L+H
Sbjct: 7   PEETIISSVFTTRHNATCYLSH 28


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 618 KQIQIPTEVKIRTETQPHTMKSDSEKTTDADENMEFNTKALVGCGGDFTVYIDDDGRIYS 677
           KQ++IP +V +   T    + S + ++ D + N +         G    VY + D   + 
Sbjct: 166 KQVEIPHDVAVNATTGKGRLSSLAVQSLDCNTNSDTMVYIADEKGEGLIVYHNSDDSFHR 225

Query: 678 -TGNT 681
            T NT
Sbjct: 226 LTSNT 230


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 618 KQIQIPTEVKIRTETQPHTMKSDSEKTTDADENMEFNTKALVGCGGDFTVYIDDDGRIYS 677
           KQ++IP +V +   T    + S + ++ D + N +         G    VY + D   + 
Sbjct: 166 KQVEIPHDVAVNATTGKGRLSSLAVQSLDCNTNSDTMVYIADEKGEGLIVYHNSDDSFHR 225

Query: 678 -TGNT 681
            T NT
Sbjct: 226 LTSNT 230


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 618 KQIQIPTEVKIRTETQPHTMKSDSEKTTDADENMEFNTKALVGCGGDFTVYIDDDGRIYS 677
           KQ++IP +V +   T    + S + ++ D + N +         G    VY + D   + 
Sbjct: 166 KQVEIPHDVAVNATTGKGRLSSLAVQSLDCNTNSDTMVYIADEKGEGLIVYHNSDDSFHR 225

Query: 678 -TGNT 681
            T NT
Sbjct: 226 LTSNT 230


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.4 bits (48), Expect = 9.3
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 484 ACGASVFGQLGTGQRGKASLPVRVALHEPVR 514
           ACGA     LG G   KA++ +R+ L E ++
Sbjct: 210 ACGAGFIDGLGLGDNTKAAV-MRLGLMEIIK 239


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.135    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 267,224
Number of Sequences: 429
Number of extensions: 10475
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 6
length of query: 993
length of database: 140,377
effective HSP length: 64
effective length of query: 929
effective length of database: 112,921
effective search space: 104903609
effective search space used: 104903609
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)