Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000415-TA|BGIBMGA000415-PA|IPR009091|Regulator of
chromosome condensation/beta-lactamase-inhibitor protein II,
IPR000408|Regulator of chromosome condensation, RCC1
(993 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 77 1e-14
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb... 58 6e-09
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 44 8e-05
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 33 0.26
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 32 0.45
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 28 5.6
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 28 7.4
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 27 9.7
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 27 9.7
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 27 9.7
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 77.0 bits (181), Expect = 1e-14
Identities = 64/230 (27%), Positives = 105/230 (45%), Gaps = 19/230 (8%)
Query: 410 PLVC-VAAGHYHSAAVDAGGRLLTWGWGVHGQLGLGNIDDQWTPQLVTKFLGRK-VQSVG 467
P +C +A G H A+ G++ TWG G QLG ++ + L + L K + SVG
Sbjct: 226 PEICQLATGTDHIIALTTTGKVYTWGNGQQFQLGRRMLERRRLQGLTPQPLALKNIISVG 285
Query: 468 CGACHSVLLTRGGELWACGASVFGQLGTG----QRGKA-SLPVRVALHEP--VRALAAGY 520
G+ HS + G ++A G ++ Q G + G + P V E V+++ G
Sbjct: 286 AGSYHSFAIDNKGRVYAWGLNITRQCGIEVEDEEEGAVITKPTLVDALEGYNVKSITGGE 345
Query: 521 FHNLALTHKGEVYVWGASPQQVXXXXXXXXXEPSSPTLPFHDDNDRYLA-PSCVD-TTNV 578
H LAL G V WG + E + N+ YL+ P+ + TNV
Sbjct: 346 HHTLALLEDGRVLAWGRDDRHQLGIPDNALPET---VVKDEKGNNYYLSTPTIIPGLTNV 402
Query: 579 RGRIVQISAGWHHSCIINNMGSIYTWGLNFDGQLGSGDR-KQIQIPTEVK 627
+Q+ G HH+ + + G +Y+WG + ++G GD + + +PT V+
Sbjct: 403 ----IQVVCGTHHNLAVTSDGKVYSWGSAENYEVGQGDNDEDVAVPTLVR 448
Score = 57.2 bits (132), Expect = 1e-08
Identities = 79/286 (27%), Positives = 113/286 (39%), Gaps = 51/286 (17%)
Query: 411 LVCVAAGHYHSAAVDAGGRLLTWGWGVHGQLGL----------GNIDD---QWTPQLVTK 457
+V +A G HSAA+ GR+ TWG LG +D+ + TP V
Sbjct: 110 VVDLAVGGMHSAALSHDGRVYTWGVNDDYALGRLTKDQKDENGDKVDNDLLEGTPSKVEG 169
Query: 458 FLGR-KVQSVGCGACHSVLLTRGG--ELWACGASVFGQLGTGQRGKASL-PVRVALHEPV 513
L +V V C + +T G W G LG K + P ++ L E +
Sbjct: 170 ALSHLRVTKVICSDNLTAAITDNGCCFTWGTFRCSDGVLGYSDSQKRTAEPTQMRLPE-I 228
Query: 514 RALAAGYFHNLALTHKGEVYVWGASPQQVXXXXXXXXXEPSSPTLPFHDDNDRYLAPSCV 573
LA G H +ALT G+VY WG Q L P +
Sbjct: 229 CQLATGTDHIIALTTTGKVYTWGNGQQFQLGRRMLERRRLQG------------LTPQPL 276
Query: 574 DTTNVRGRIVQISAGWHHSCIINNMGSIYTWGLNFDGQLGSGDRKQIQIPTEVKIRTETQ 633
N I+ + AG +HS I+N G +Y WGLN Q G I++ E + T+
Sbjct: 277 ALKN----IISVGAGSYHSFAIDNKGRVYAWGLNITRQCG------IEVEDEEEGAVITK 326
Query: 634 PHTMKSDSEKTTDADENMEFNTKALVGCGGDFTVYIDDDGRIYSTG 679
P DA E +N K++ G G T+ + +DGR+ + G
Sbjct: 327 P--------TLVDALEG--YNVKSITG-GEHHTLALLEDGRVLAWG 361
Score = 53.6 bits (123), Expect = 1e-07
Identities = 63/264 (23%), Positives = 102/264 (38%), Gaps = 27/264 (10%)
Query: 421 SAAVDAGGRLLTWGWGVHGQLGLGNIDDQWTPQLVTKFLGRKVQSVGCGACHSVLLTRGG 480
+AA+ G TWG LG D Q T+ ++ + G H + LT G
Sbjct: 186 TAAITDNGCCFTWGTFRCSDGVLGYSDSQKRTAEPTQMRLPEICQLATGTDHIIALTTTG 245
Query: 481 ELWACGASVFGQLGTGQRGKASL----PVRVALHEPVRALAAGYFHNLALTHKGEVYVWG 536
+++ G QLG + L P +AL + ++ AG +H+ A+ +KG VY WG
Sbjct: 246 KVYTWGNGQQFQLGRRMLERRRLQGLTPQPLALKNII-SVGAGSYHSFAIDNKGRVYAWG 304
Query: 537 ASPQQVXXXXXXXXXEPSSPTLPFHDDNDRYLAPSCVDTTNVRGRIVQISAGWHHSCIIN 596
+ + E + T P D ++ NV+ I+ G HH+ +
Sbjct: 305 LNITRQCGIEVEDEEEGAVITKPTLVD--------ALEGYNVKS----ITGGEHHTLALL 352
Query: 597 NMGSIYTWGLNFDGQLGSGDRKQIQIPTEVKIRTETQPHTMKSDSEKTTDADENMEFNTK 656
G + WG + DR Q+ IP ET K ++ +
Sbjct: 353 EDGRVLAWGRD--------DRHQLGIPDNAL--PETVVKDEKGNNYYLSTPTIIPGLTNV 402
Query: 657 ALVGCGGDFTVYIDDDGRIYSTGN 680
V CG + + DG++YS G+
Sbjct: 403 IQVVCGTHHNLAVTSDGKVYSWGS 426
Score = 34.3 bits (75), Expect = 0.085
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 328 VVSDGNARVMMASTPVNTELIGRVIDVACGRHHTLILTENG-LYSAG 373
VV D STP + VI V CG HH L +T +G +YS G
Sbjct: 379 VVKDEKGNNYYLSTPTIIPGLTNVIQVVCGTHHNLAVTSDGKVYSWG 425
Score = 32.3 bits (70), Expect = 0.34
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 7/132 (5%)
Query: 351 VIDVACGRHHTLILTENGLYSA-GDNTFGQLXXXXXXXXXXXXXXXXXXXVLRVR---LA 406
V + G HHTL L E+G A G + QL +
Sbjct: 338 VKSITGGEHHTLALLEDGRVLAWGRDDRHQLGIPDNALPETVVKDEKGNNYYLSTPTIIP 397
Query: 407 GGAPLVCVAAGHYHSAAVDAGGRLLTWGWGVHGQLGLG-NIDDQWTPQLVTKFLGRKV-- 463
G ++ V G +H+ AV + G++ +WG + ++G G N +D P LV ++V
Sbjct: 398 GLTNVIQVVCGTHHNLAVTSDGKVYSWGSAENYEVGQGDNDEDVAVPTLVRSKAIKEVAI 457
Query: 464 QSVGCGACHSVL 475
+ G G S++
Sbjct: 458 RVAGAGGQFSII 469
>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 351
Score = 58.0 bits (134), Expect = 6e-09
Identities = 69/288 (23%), Positives = 108/288 (37%), Gaps = 24/288 (8%)
Query: 354 VACGRHHTLILTENG-LYSAGDNTFGQLXXXXXXXXXXXXXXXXXXXVLRVRLAGGAPLV 412
++CG +HTL+L E+ L++ GDN GQ RV L
Sbjct: 36 ISCGGNHTLLLDEDSQLWACGDNRKGQCGYEVKEPLYNPLSPDYLRIFTRVSHERWVFLT 95
Query: 413 CVAAGHYHSAAVDAGGR-LLTWGWGVHGQLGLGN-IDDQWTPQLVTKFLGRK--VQSVGC 468
C G S V A R + + G G+ G+LG GN + Q ++ +L K + +
Sbjct: 96 C---GWEFSVIVHADRRRVCSCGEGLSGELGQGNRSNSQGLREIDIPYLDDKEFIIDISA 152
Query: 469 GACHSVLLTRGGELWACGASVFGQLGTGQRGKASLPVRVALHEPVRALAAGYFHNLALTH 528
G H + +T G L+ CG GQLG + + E +A+ G + L
Sbjct: 153 GLRHWICVTNEGNLYGCGDGRKGQLGPVVMKTVNKVSFLGRIEHAQAVVCGVQFSAVLQE 212
Query: 529 KGEVYVWGASPQQVXXXXXXXXXEPSSPTLPFHDDNDRYLAPSCVDTTN---VRGR---- 581
G V V G V S + + + S + T GR
Sbjct: 213 TGHVIVLGGEKWNVAAECDAWQANNSELSSSICSISANWSTLSLLSTEGCVYAFGRCDRA 272
Query: 582 ---------IVQISAGWHHSCIINNMGSIYTWGLNFDGQLGSGDRKQI 620
IVQI++G H+ + GS+ +G N G + D++ +
Sbjct: 273 QKAHTKASDIVQIASGTEHNILRTKKGSVLIYGWNEHGNASNDDKRDV 320
Score = 55.6 bits (128), Expect = 3e-08
Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 19/190 (10%)
Query: 430 LLTWGWGVHGQLGLGNIDDQWTPQLVTKFLGRKVQSVGCGACHSVLLTRGGELWACGASV 489
LL+ G + QLGL N +D ++PQ+V R ++ + CG H++LL +LWAC
Sbjct: 2 LLSLGSNGNFQLGLNNDEDVYSPQIVP--FDRAIEKISCGGNHTLLLDEDSQLWAC---- 55
Query: 490 FGQLGTGQRGKASLPVRVALHEPVRALAAGYFHNLA-LTHKGEVYV---WGASP-QQVXX 544
G ++G+ V+ L+ P L+ Y ++H+ V++ W S
Sbjct: 56 ----GDNRKGQCGYEVKEPLYNP---LSPDYLRIFTRVSHERWVFLTCGWEFSVIVHADR 108
Query: 545 XXXXXXXEPSSPTL-PFHDDNDRYLAPSCVDTTNVRGRIVQISAGWHHSCIINNMGSIYT 603
E S L + N + L + + + I+ ISAG H + N G++Y
Sbjct: 109 RRVCSCGEGLSGELGQGNRSNSQGLREIDIPYLDDKEFIIDISAGLRHWICVTNEGNLYG 168
Query: 604 WGLNFDGQLG 613
G GQLG
Sbjct: 169 CGDGRKGQLG 178
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 44.4 bits (100), Expect = 8e-05
Identities = 50/206 (24%), Positives = 87/206 (42%), Gaps = 30/206 (14%)
Query: 427 GGRLLTWGWGVHGQLGLGNIDDQWTPQLV-------------TKFLGRKVQSVGCGACHS 473
G L +G V+ LG+ N + +P+ V F K+ V HS
Sbjct: 148 GNELYGFGTNVNNTLGIANGKEPSSPERVFLLKNQTESPTSGQLFSRDKILDVQASKFHS 207
Query: 474 VLLTR--GGELWACGASVFGQLGTGQRGKAS-LPVRVALHEPVRALAAGYFHNLALTHKG 530
V+LT ++ CG G++G + + +P+ +H+ ++ ++ + H+LALT G
Sbjct: 208 VVLTDEPSQNVYVCGIGAGGRIGFNTDVQYNFIPIPGIIHKVIQ-ISVSHTHSLALTKFG 266
Query: 531 EVYVWGASPQQVXXXXXXXXXEPSSPTLPFHDDNDRYLAPSCVDTTNVRGRIVQISAGWH 590
+Y WG + E D+ + P + +I+ ++AG
Sbjct: 267 SIYSWGKN----------GSGELGLSNDELKKDDPIQITPRRISAFK-DYQIIGMAAGKS 315
Query: 591 HSCIINNMGSIYTWGLNFDGQLGSGD 616
+S + IY+WGLN +GQLG D
Sbjct: 316 YSVAWTDT-DIYSWGLN-NGQLGISD 339
Score = 41.1 bits (92), Expect = 7e-04
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 411 LVCVAAGHYHSAAVDAGGRLLTWGWGVHGQLGLGN----IDD--QWTPQLVTKFLGRKVQ 464
++ ++ H HS A+ G + +WG G+LGL N DD Q TP+ ++ F ++
Sbjct: 249 VIQISVSHTHSLALTKFGSIYSWGKNGSGELGLSNDELKKDDPIQITPRRISAFKDYQII 308
Query: 465 SVGCGACHSVLLTRGGELWACGASVFGQLGTGQR-GKASLPVRVA-LHEPV 513
+ G +SV T ++++ G + GQLG S P RVA L PV
Sbjct: 309 GMAAGKSYSVAWT-DTDIYSWGLN-NGQLGISDHISVVSTPRRVAGLLSPV 357
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 581 RIVQISAGWHHSCIINNMGSIYTWGLNFDGQLG-SGDRKQIQIPTEVKIR 629
+++QIS HS + GSIY+WG N G+LG S D + P ++ R
Sbjct: 248 KVIQISVSHTHSLALTKFGSIYSWGKNGSGELGLSNDELKKDDPIQITPR 297
Score = 35.5 bits (78), Expect = 0.037
Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 13/139 (9%)
Query: 414 VAAGHYHSAAV--DAGGRLLTWGWGVHGQLGLGNIDDQWTPQLVTKFLGRKVQSVGCGAC 471
V A +HS + + + G G G++G N D Q+ + + + +Q +
Sbjct: 200 VQASKFHSVVLTDEPSQNVYVCGIGAGGRIGF-NTDVQYNFIPIPGIIHKVIQ-ISVSHT 257
Query: 472 HSVLLTRGGELWACGASVFGQLG-TGQRGKASLPVRVALHE-------PVRALAAGYFHN 523
HS+ LT+ G +++ G + G+LG + K P+++ + +AAG ++
Sbjct: 258 HSLALTKFGSIYSWGKNGSGELGLSNDELKKDDPIQITPRRISAFKDYQIIGMAAGKSYS 317
Query: 524 LALTHKGEVYVWGASPQQV 542
+A T ++Y WG + Q+
Sbjct: 318 VAWTDT-DIYSWGLNNGQL 335
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 32.7 bits (71), Expect = 0.26
Identities = 24/106 (22%), Positives = 42/106 (39%)
Query: 817 TPLEIEHSADCEAGPPTRKDEVKITITNVIAKRIKDVSLAILNDVAYNVIDPSTFKSLPC 876
TP+ + P TRK + T KR K+ D + D SL
Sbjct: 149 TPIGSTTPKSSHSPPSTRKRRGSVGTTATHTKRSKNAPKTSPKDASNETADQEKELSLHT 208
Query: 877 CCDELKYLLKKKLPNATVNIFEQDLSGKAADVIDKLINIFPVDAAL 922
DE++ ++K + A V++FE+ + + + L ++ AL
Sbjct: 209 SIDEIQNPVRKSVAKAWVSVFEKIIEKAKLEGVQGLEDLNSTSLAL 254
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 31.9 bits (69), Expect = 0.45
Identities = 23/99 (23%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 887 KKLPNATVNIFEQDLSGKAAD---VIDKLINIFPVDAALWEICFRLSKDFYINNSLSITE 943
+K+ N ++ +++ K + V++K I+ +I + KD ++ LS+ E
Sbjct: 68 RKVENDNMDAISANINSKLENRLKVLEKAISSITNSPIAGQISLKSEKDVFLQGLLSMDE 127
Query: 944 LERVLRKYMESNATTMITAILYSKDCSEYSEILSPKFYL 982
+E +L ++E + ++ YS S+Y E+L K +L
Sbjct: 128 IELLLEIFIERYGKRWL-SVDYS--ASQYMELLYTKSHL 163
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 678 TGNTHLQISNEKTKGGNRVIMMKTTKRVIKIPASRTNHKF 717
T T+LQ+ +K G + + KRV++ ASRT HK+
Sbjct: 978 TPTTNLQLFRDKVIRG-LIPCLDDPKRVVRTEASRTRHKW 1016
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 128 LGVFGRLHELSMFKQSANVGSLGNAAIIV--KLLAVLIKMSTNEEEIFDWDVK 178
LG F R+ + ++ + ++ +L N+ V K+ LI ++T E +I DWD+K
Sbjct: 1104 LGPFSRISQSNINQGFSHQVALNNSVKSVHPKISRKLILVATLEYDIPDWDIK 1156
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 710 ASRTNHKFLFQPVAAVDMLSSANDLQRQ 737
A R HK Q + VD + ANDLQ Q
Sbjct: 604 AQREKHKLYAQLTSNVDAIPPANDLQNQ 631
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 570 PSCVDTTNVRGRIVQISAGWHHSCIINNMGSIYTWG--LNFDGQLGSG 615
P D RG I Q++ G HH + + SI++WG L + G LG G
Sbjct: 328 PVIHDFLQNRG-IKQLAHGDHHHLYLTSDHSIWSWGVELRYCGCLGLG 374
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 929 LSKDFYINNSLSITELERVLRKYMESNATTMITAIL 964
L+ Y + ELERV++ Y+E++ T I A++
Sbjct: 9 LTHKLYDKRKATAYELERVVKGYLENDETEKIRAVI 44
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.135 0.421
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,336,821
Number of Sequences: 5004
Number of extensions: 176947
Number of successful extensions: 443
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 33
length of query: 993
length of database: 2,362,478
effective HSP length: 80
effective length of query: 913
effective length of database: 1,962,158
effective search space: 1791450254
effective search space used: 1791450254
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)
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