GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000415-TA|BGIBMGA000415-PA|IPR009091|Regulator of
chromosome condensation/beta-lactamase-inhibitor protein II,
IPR000408|Regulator of chromosome condensation, RCC1
         (993 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY745233-1|AAU93512.1|  100|Anopheles gambiae SOD3B protein.           28   1.4  
AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/p...    25   7.4  

>AY745233-1|AAU93512.1|  100|Anopheles gambiae SOD3B protein.
          Length = 100

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 660 GCGGDFTVYIDDDGRI--YSTGNTHLQISNEK-TKGGNRVIMMKT 701
           G   D   ++ D G I  YSTG   +QI+N+K T  G+R I+ +T
Sbjct: 9   GAPDDANCHVGDLGNIVAYSTGLAKIQIANKKLTLVGDRSIIGRT 53


>AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal
           ion/proton exchanger 3 protein.
          Length = 1221

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)

Query: 475 LLTRGGELWACG-ASVFG 491
           + T GG LWACG   +FG
Sbjct: 346 IATIGGSLWACGQTGIFG 363


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.135    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,002,410
Number of Sequences: 2123
Number of extensions: 41150
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 74
Number of HSP's gapped (non-prelim): 2
length of query: 993
length of database: 516,269
effective HSP length: 71
effective length of query: 922
effective length of database: 365,536
effective search space: 337024192
effective search space used: 337024192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)