Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000414-TA|BGIBMGA000414-PA|IPR000637|HMG-I and HMG-Y,
DNA-binding, IPR001965|Zinc finger, PHD-type, IPR011011|Zinc finger,
FYVE/PHD-type, IPR010993|Sterile alpha motif homology
(454 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g08020.1 68416.m00979 PHD finger protein-related contains low... 71 2e-12
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam... 63 3e-10
At1g05380.1 68414.m00546 PHD finger transcription factor, putative 44 2e-04
At4g14700.1 68417.m02259 replication control protein, putative s... 44 3e-04
At3g14980.1 68416.m01894 PHD finger transcription factor, putati... 43 4e-04
At4g12620.1 68417.m01988 replication control protein, putative s... 42 8e-04
At3g14740.2 68416.m01864 PHD finger family protein similar to zi... 41 0.002
At3g14740.1 68416.m01863 PHD finger family protein similar to zi... 41 0.002
At1g77250.1 68414.m08997 PHD finger family protein contains Pfam... 41 0.002
At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD fi... 40 0.005
At5g16680.1 68418.m01951 PHD finger family protein contains Pfam... 39 0.006
At1g50620.1 68414.m05688 PHD finger family protein contains Pfam... 38 0.018
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ... 37 0.024
At2g02690.1 68415.m00208 hypothetical protein 37 0.032
At4g13490.1 68417.m02105 zinc finger (C3HC4-type RING finger) fa... 36 0.042
At2g27660.1 68415.m03352 DC1 domain-containing protein contains ... 36 0.056
At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger) fa... 35 0.097
At4g39100.1 68417.m05536 PHD finger family protein / bromo-adjac... 35 0.13
At4g27910.1 68417.m04006 PHD finger protein-related / SET domain... 35 0.13
At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger) fa... 35 0.13
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL... 33 0.30
At2g02700.1 68415.m00210 DC1 domain-containing protein contains ... 33 0.30
At1g44050.1 68414.m05082 DC1 domain-containing protein contains ... 33 0.30
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 33 0.39
At5g20885.1 68418.m02480 zinc finger (C3HC4-type RING finger) fa... 33 0.39
At4g10370.1 68417.m01702 DC1 domain-containing protein contains ... 33 0.39
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 33 0.39
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 33 0.39
At5g55770.1 68418.m06951 DC1 domain-containing protein contains ... 33 0.52
At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger) fa... 33 0.52
At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD fin... 33 0.52
At1g79350.1 68414.m09247 DNA-binding protein, putative contains ... 33 0.52
At5g63900.1 68418.m08023 PHD finger family protein contains Pfam... 32 0.69
At2g02680.1 68415.m00207 DC1 domain-containing protein contains ... 32 0.69
At1g61840.1 68414.m06978 DC1 domain-containing protein similar t... 32 0.69
At2g40050.1 68415.m04921 DC1 domain-containing protein contains ... 32 0.91
At5g53430.1 68418.m06640 PHD finger family protein / SET domain-... 31 1.2
At4g37880.1 68417.m05357 expressed protein 31 1.2
At3g05545.1 68416.m00609 transcription factor, putative / zinc f... 31 1.2
At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger) fa... 31 1.2
At2g02640.1 68415.m00203 DC1 domain-containing protein contain... 31 1.2
At2g02610.1 68415.m00200 DC1 domain-containing protein contain... 31 1.2
At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger) fa... 31 1.6
At5g44180.1 68418.m05406 homeobox transcription factor, putative... 31 1.6
At5g42840.1 68418.m05221 DC1 domain-containing protein contains ... 31 1.6
At3g26550.1 68416.m03314 DC1 domain-containing protein contains ... 31 1.6
At3g02890.1 68416.m00284 PHD finger protein-related contains low... 31 1.6
At2g36720.1 68415.m04505 PHD finger transcription factor, putative 31 1.6
At2g02630.1 68415.m00202 DC1 domain-containing protein contains ... 31 1.6
At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger) fa... 31 1.6
At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger) fa... 31 1.6
At5g54480.1 68418.m06784 hypothetical protein 31 2.1
At5g43200.1 68418.m05278 zinc finger (C3HC4-type RING finger) fa... 31 2.1
At5g46670.1 68418.m05751 CHP-rich zinc finger protein, putative ... 30 2.8
At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein ... 30 2.8
At3g09760.1 68416.m01156 zinc finger (C3HC4-type RING finger) fa... 30 2.8
At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family... 30 3.7
At5g26190.1 68418.m03116 DC1 domain-containing protein contains ... 30 3.7
At5g24870.2 68418.m02943 zinc finger (C3HC4-type RING finger) fa... 30 3.7
At5g24870.1 68418.m02942 zinc finger (C3HC4-type RING finger) fa... 30 3.7
At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contai... 30 3.7
At3g21210.1 68416.m02680 universal stress protein (USP) family p... 30 3.7
At2g37520.1 68415.m04601 PHD finger family protein contains Pfam... 30 3.7
At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative ... 29 4.8
At5g42080.2 68418.m05123 GTP-binding protein / phragmoplastin, p... 29 4.8
At5g42080.1 68418.m05122 GTP-binding protein / phragmoplastin, p... 29 4.8
At5g24330.1 68418.m02867 PHD finger family protein / SET domain-... 29 4.8
At5g01730.1 68418.m00091 expressed protein 29 4.8
At3g08500.1 68416.m00985 myb family transcription factor (MYB83)... 29 4.8
At2g02470.1 68415.m00186 PHD finger family protein contains Pfam... 29 4.8
At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger) fa... 29 4.8
At5g66160.2 68418.m08334 protease-associated zinc finger (C3HC4-... 29 6.4
At5g66160.1 68418.m08335 protease-associated zinc finger (C3HC4-... 29 6.4
At5g58610.1 68418.m07345 PHD finger transcription factor, putative 29 6.4
At5g12400.1 68418.m01458 PHD finger transcription factor, putati... 29 6.4
At4g31200.3 68417.m04431 SWAP (Suppressor-of-White-APricot)/surp... 29 6.4
At4g31200.2 68417.m04430 SWAP (Suppressor-of-White-APricot)/surp... 29 6.4
At4g31200.1 68417.m04429 SWAP (Suppressor-of-White-APricot)/surp... 29 6.4
At4g01930.1 68417.m00257 DC1 domain-containing protein contains ... 29 6.4
At3g60870.1 68416.m06809 DNA-binding protein-related contains Pf... 29 6.4
At3g28620.1 68416.m03572 zinc finger (C3HC4-type RING finger) fa... 29 6.4
At1g20900.1 68414.m02617 DNA-binding protein-related contains Pf... 29 6.4
At5g57640.1 68418.m07201 hypothetical protein 29 8.5
At5g37270.1 68418.m04477 zinc finger (C3HC4-type RING finger) fa... 29 8.5
At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar ... 29 8.5
At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar ... 29 8.5
At5g02340.1 68418.m00157 DC1 domain-containing protein contains ... 29 8.5
At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 29 8.5
At2g46225.1 68415.m05748 expressed protein 29 8.5
>At3g08020.1 68416.m00979 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 764
Score = 70.9 bits (166), Expect = 2e-12
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 213 DSLPHEESGGVCSVCLVQKPRGSND--RLVECRDCSNKAHISCLQSGSNILKPRPDNTWQ 270
+ L H +C +C + + GS+ R++ C+DC K H +CL+S + ++W
Sbjct: 137 EELGHSGMNIMCRMCFLGEGEGSDRARRMLSCKDCGKKYHKNCLKSWAQHRDLFHWSSWS 196
Query: 271 CPHCKTCVICCETNDAGVLTVCSVCSDAYHALCHAP 306
CP C+ C +C T D C C AYH C P
Sbjct: 197 CPSCRVCEVCRRTGDPNKFMFCKRCDAAYHCYCQHP 232
>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
profile PF00628: PHD-finger
Length = 696
Score = 63.3 bits (147), Expect = 3e-10
Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 14/179 (7%)
Query: 137 RSTAVRVGERRKMAKKVFDPSDNNVPSKR-----KRGRPVGSLNKST--IKKRLMVAGHI 189
R A VG A +V S N VP+KR K+ V + N + +++ + V +
Sbjct: 74 RIAARNVGVGSDSAMEVVAASSNLVPAKRTLVLQKKAVEVYAANDCSGDLEESVFVRKRV 133
Query: 190 KDDAPLSESQFSLDGSGDEIDQEDSLPHEESGGVCSVC-LVQKPRGSNDRLVECRDCSNK 248
S+ + S ++++ED H + C +C LV+ + +++ C+ C K
Sbjct: 134 -----FSDVDYLYLVSVKDLNEEDH-DHHSASITCHMCYLVEVGKSERAKMLSCKCCGKK 187
Query: 249 AHISCLQSGSNILKPRPDNTWQCPHCKTCVICCETNDAGVLTVCSVCSDAYHALCHAPQ 307
H +C++S + ++W CP C+ C C D C C DAYH C P+
Sbjct: 188 YHRNCVKSWAQHRDLFNWSSWACPSCRICEGCGTLGDPKKFMFCKRCDDAYHCDCQHPR 246
>At1g05380.1 68414.m00546 PHD finger transcription factor, putative
Length = 600
Score = 44.0 bits (99), Expect = 2e-04
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 22/103 (21%)
Query: 208 EIDQEDSLPHEESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDN 267
++D + P++++ G+C G L+ C C + H +CL G +L P
Sbjct: 77 QVDTDGDDPNDDACGIC---------GDGGDLICCDGCPSTYHQNCL--GMQVL---PSG 122
Query: 268 TWQCPHCKTCVICCETNDAG-------VLTVCSVCSDAYHALC 303
W CP+C TC C +G L C +C YH LC
Sbjct: 123 DWHCPNC-TCKFCDAAVASGGKDGNFISLLSCGMCERRYHQLC 164
Score = 34.3 bits (75), Expect = 0.17
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Query: 255 QSGSNILKPRPDNTWQCPHCKTCVICCETNDAGVLTVCSVCSDAYHALCHAPQIPDRLKA 314
+ +N+ + D P+ C IC D G L C C YH C Q+ L +
Sbjct: 68 KDATNLALHQVDTDGDDPNDDACGIC---GDGGDLICCDGCPSTYHQNCLGMQV---LPS 121
Query: 315 WDQWECNNC 323
D W C NC
Sbjct: 122 GD-WHCPNC 129
>At4g14700.1 68417.m02259 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1) [Homo sapiens]
SWISS-PROT:Q13415
Length = 809
Score = 43.6 bits (98), Expect = 3e-04
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 16/141 (11%)
Query: 137 RSTAVRVGERRKMAKKVFDPSDNNVPSKRKRGRPVGSLNKSTIKKRLMVAGHIKDDAPLS 196
R+ + V E+ K KK DP + P P+ S K T KK+ + ++ D
Sbjct: 85 RTNDIVVAEKSK--KKKIDPEVSFSPVS-----PIRSETKKTKKKKRVYYNKVEFD---- 133
Query: 197 ESQFSLDGSGDEIDQEDSLPHEESGGVCSV--CLVQKPRGSNDRLVECRDCSNKAHISCL 254
E++F + ED+ P EE + C + +N ++EC DC H++CL
Sbjct: 134 ETEFEIGDDVYVKRTEDANPDEEEEEDPEIEDCQICFKSHTNTIMIECDDCLGGFHLNCL 193
Query: 255 QSGSNILKPRPDNTWQCPHCK 275
+ LK P+ W C C+
Sbjct: 194 KPP---LKEVPEGDWICQFCE 211
Score = 29.1 bits (62), Expect = 6.4
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 272 PHCKTCVICCETNDAGVLTVCSVCSDAYHALCHAPQIPDRLKAWDQWECNNC 323
P + C IC +++ ++ C C +H C P + + + W C C
Sbjct: 161 PEIEDCQICFKSHTNTIMIECDDCLGGFHLNCLKPPLKEVPEG--DWICQFC 210
>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
contains Pfam profile: PF00628 PHD-finger
Length = 1189
Score = 43.2 bits (97), Expect = 4e-04
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 19/95 (20%)
Query: 213 DSLPHEESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDNTWQCP 272
D P+++S GVC G L+ C +C + H +CL ++ P+ +W C
Sbjct: 721 DDDPNDDSCGVC---------GDGGELICCDNCPSTFHQACLS-----MQVLPEGSWYCS 766
Query: 273 HCKTCVICCE-TNDAGVLTV---CSVCSDAYHALC 303
C TC IC E +D + CS C+ YH C
Sbjct: 767 SC-TCWICSELVSDNAERSQDFKCSQCAHKYHGTC 800
Score = 30.7 bits (66), Expect = 2.1
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 13/91 (14%)
Query: 234 GSNDRLVECRDCSNKAHISCLQSGSNILKPRPDNTWQCPHCKTCVICCETNDAGVLTVCS 293
GS C+ + A ++G + K D+ P+ +C +C D G L C
Sbjct: 690 GSGKPFASCQLEAWSAEYKARRNGWRLEKASDDD----PNDDSCGVC---GDGGELICCD 742
Query: 294 VCSDAYHALCHAPQI-PDRLKAWDQWECNNC 323
C +H C + Q+ P+ W C++C
Sbjct: 743 NCPSTFHQACLSMQVLPE-----GSWYCSSC 768
>At4g12620.1 68417.m01988 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1)[Homo sapiens]
SWISS-PROT:Q13415
Length = 813
Score = 41.9 bits (94), Expect = 8e-04
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 7/117 (5%)
Query: 162 PSKRKR---GRPVGSLNKSTIKKRLMVAGHIKDDAPLSESQFSLDGSGDEIDQEDSLPHE 218
P K+K+ PV + TIKK + E++F + +EDS E
Sbjct: 101 PKKKKKIDSFTPVSPIRSETIKKTKKKKRVYYNKVEFDETEFEIGDDVYVKRREDSNSDE 160
Query: 219 ESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDNTWQCPHCK 275
E C + +N ++EC DC H+ CL+ LK P+ W C C+
Sbjct: 161 EEDPEIEDCQICFKSDTNI-MIECDDCLGGFHLKCLKPP---LKEVPEGDWICQFCE 213
>At3g14740.2 68416.m01864 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 343
Score = 40.7 bits (91), Expect = 0.002
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 204 GSGDEIDQEDSLPHEESGGVCSVCLVQKPRGSN-DRLVECRDCSNKAHISCLQSGSNILK 262
G G +D D +E G +C+VC Q G + +V C C H SC G+ ++K
Sbjct: 133 GKGKALDLSDREVEDEDGIMCAVC--QSTDGDPLNPIVFCDGCDLMVHASCY--GNPLVK 188
Query: 263 PRPDNTWQCPHC 274
P+ W C C
Sbjct: 189 AIPEGDWFCRQC 200
>At3g14740.1 68416.m01863 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 341
Score = 40.7 bits (91), Expect = 0.002
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 204 GSGDEIDQEDSLPHEESGGVCSVCLVQKPRGSN-DRLVECRDCSNKAHISCLQSGSNILK 262
G G +D D +E G +C+VC Q G + +V C C H SC G+ ++K
Sbjct: 133 GKGKALDLSDREVEDEDGIMCAVC--QSTDGDPLNPIVFCDGCDLMVHASCY--GNPLVK 188
Query: 263 PRPDNTWQCPHC 274
P+ W C C
Sbjct: 189 AIPEGDWFCRQC 200
>At1g77250.1 68414.m08997 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 522
Score = 40.7 bits (91), Expect = 0.002
Identities = 29/102 (28%), Positives = 36/102 (35%), Gaps = 7/102 (6%)
Query: 223 VCSVCLVQKPRGSNDRLVECRDCSNKA-HISCLQSGSNILKPRPDNTWQCPHCKTCVICC 281
+C C + G + C +K HI CL S L W C C C C
Sbjct: 354 LCRTCGTKVDSGGKYITCDHPFCPHKYYHIRCLTSRQIKLH---GVRWYCSSC-LCRNCL 409
Query: 282 ETNDAGVLTVCSVCSDAYHALCHAPQIPDRLKAWDQWECNNC 323
D + +C C DAYH C P P +W C C
Sbjct: 410 TDKDDDKIVLCDGCDDAYHIYCMRP--PCESVPNGEWFCTAC 449
Score = 34.3 bits (75), Expect = 0.17
Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 5/96 (5%)
Query: 239 LVECRDCSNKAHISCLQSGSNILKPRPDNTWQCPHCKTCVICCETNDAGVLTVCSVCSDA 298
L+E S K + +G + P +N C +C E +A C C D
Sbjct: 205 LLELSRTSYKEQLKQFYTGESKPCPNAENIRNDSVSDICKLCGEKAEARDCLACDHCEDM 264
Query: 299 YHALCHAPQIPDRLKAWDQWECNNCLESRPTVIGSP 334
YH C P + W C +C IGSP
Sbjct: 265 YHVSCAQP--GGKGMPTHSWYCLDCTSKG---IGSP 295
Score = 33.1 bits (72), Expect = 0.39
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 15/95 (15%)
Query: 204 GSGDEIDQEDSLPHEESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKP 263
G +++ ++ +C +C + + D L C C + H+SC Q G K
Sbjct: 223 GESKPCPNAENIRNDSVSDICKLC--GEKAEARDCLA-CDHCEDMYHVSCAQPGG---KG 276
Query: 264 RPDNTWQCPHC---------KTCVICCETNDAGVL 289
P ++W C C + CV+C + G++
Sbjct: 277 MPTHSWYCLDCTSKGIGSPHENCVVCEKMKTQGMM 311
>At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD
finger family protein contains Pfam profiles: PF01448
ELM2 domain, PF00628 PHD-finger
Length = 631
Score = 39.5 bits (88), Expect = 0.005
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 253 CLQSGSNILKPRPDNTWQCPHCKTCVICCETNDAGVLTVCSVCSDAYHALCHAPQIPDRL 312
C S S + + D + P + C C + + +C C +AYH C Q+ D +
Sbjct: 390 CYSSDSGVSETDTDGS-SSPF-RQCKHCDKPGTVEKMLICDECEEAYHTRCCGVQMKD-V 446
Query: 313 KAWDQWECNNCLESR 327
D+W C +CL+++
Sbjct: 447 AEIDEWLCPSCLKNQ 461
>At5g16680.1 68418.m01951 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1290
Score = 39.1 bits (87), Expect = 0.006
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 186 AGHIKDDAPLSESQFSLDGSGDEIDQEDSLPHEESGGVCSVCLVQKPRGSNDRLVECRDC 245
+G + D S+S S + E + +DS E VC +C G D L C C
Sbjct: 248 SGENRKDGKSSKSSSSNSSAVSESESDDSEMVEHDVKVCDIC---GDAGREDLLAICSGC 304
Query: 246 SNKA-HISCLQSGSNILKPRPDNTWQCPHC 274
S+ A H C++ +L P+ W C C
Sbjct: 305 SDGAEHTYCMR---EMLDEVPEGDWLCEEC 331
Score = 37.5 bits (83), Expect = 0.018
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 248 KAHISCLQSGSNILKPRPDNTWQCPH-CKTCVICCETNDAGVLTVCSVCSD-AYHALCHA 305
K+ S + S + + D++ H K C IC + +L +CS CSD A H C
Sbjct: 256 KSSKSSSSNSSAVSESESDDSEMVEHDVKVCDICGDAGREDLLAICSGCSDGAEHTYCMR 315
Query: 306 PQIPDRLKAWDQWECNNCLE 325
+ D + D W C C E
Sbjct: 316 EML-DEVPEGD-WLCEECAE 333
>At1g50620.1 68414.m05688 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 629
Score = 37.5 bits (83), Expect = 0.018
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 276 TCVICCET-NDAGVLTVCSVCSDAYHALC-HAPQIPDRLKAWDQWECNNCLE 325
TC IC T N+ + +C C YH C HA I K+ +W C+ C++
Sbjct: 323 TCQICQGTINEIETVLICDACEKGYHLKCLHAHNIKGVPKS--EWHCSRCVQ 372
>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
binding domain-containing protein contains Pfam profiles
PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
binding domain
Length = 2176
Score = 37.1 bits (82), Expect = 0.024
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 222 GVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDNTWQCPHC 274
GVC VC V K +D ++ C C + H CL L PD W CP C
Sbjct: 1288 GVCKVCGVDK---DDDSVLLCDTCDAEYHTYCLNPP---LIRIPDGNWYCPSC 1334
Score = 33.1 bits (72), Expect = 0.39
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 215 LPHEESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDNTWQCPHC 274
+P + C C +P S + +V C C H+SC+ G ++ P W C C
Sbjct: 77 VPEPDRDASCGAC--GRPE-SIELVVVCDACERGFHMSCVNDG---VEAAPSADWMCSDC 130
Query: 275 KT 276
+T
Sbjct: 131 RT 132
>At2g02690.1 68415.m00208 hypothetical protein
Length = 623
Score = 36.7 bits (81), Expect = 0.032
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 224 CSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKP-RPDNTWQCPHCKT-----C 277
C++C VQK G+N C +C H C++S I P +T Q C
Sbjct: 140 CNICRVQKA-GTN--YYYCVECDVTYHKECIESPLEISYPTHAKHTLQLCFSSLRGVHQC 196
Query: 278 VICCETNDAGVLTVCSVCSDAYHALCHAPQIP 309
+IC D ++ C++C HA+C IP
Sbjct: 197 IICKNRADL-IIYYCALCDIYMHAVCAQAAIP 227
>At4g13490.1 68417.m02105 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 226
Score = 36.3 bits (80), Expect = 0.042
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 224 CSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDNTWQCPHCK 275
C+VCL +++R V CS+K H+ C+ S NI N +CP C+
Sbjct: 22 CAVCLEPLANDADERTVVKLRCSHKFHLDCVGSSFNI-----KNKMECPCCR 68
>At2g27660.1 68415.m03352 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 718
Score = 35.9 bits (79), Expect = 0.056
Identities = 29/87 (33%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 224 CSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKP-RPDNTWQ---CP-HCKTCV 278
CS C K G N R+ CR C+ H SC + I P P +T P +
Sbjct: 32 CSAC---KLTGGNGRVYSCRPCNFSLHESCSKMKQVITHPSHPSHTLSLLVAPVYDGGYF 88
Query: 279 IC--CETNDAGVLTVCSVCSDAYHALC 303
C C + G CSVC HALC
Sbjct: 89 NCDGCGIHGTGFSYQCSVCDFDIHALC 115
>At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 623
Score = 35.1 bits (77), Expect = 0.097
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 219 ESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDNTWQCPHCKTCV 278
+ GVC C V P ++ + C C H+SCL S + D W+CP C V
Sbjct: 10 DGDGVCMRCQVNPP---SEETLTCGTCVTPWHVSCLLPES-LASSTGD--WECPDCSGVV 63
Query: 279 ICCETNDAGV 288
+ G+
Sbjct: 64 VPSAAPGTGI 73
>At4g39100.1 68417.m05536 PHD finger family protein / bromo-adjacent
homology (BAH) domain-containing protein contains Pfam
domain, PF00628: PHD-finger and PF01426: BAH domain
Length = 228
Score = 34.7 bits (76), Expect = 0.13
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 227 CLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDNTWQCPHC 274
C + P +D +V+C +CS H SC+ G+ I + + + + C C
Sbjct: 142 CKCEMPYNPDDLMVQCEECSEWFHPSCI--GTTIEEAKKPDNFYCEEC 187
>At4g27910.1 68417.m04006 PHD finger protein-related / SET
domain-containing protein (TX4) nearly identical over
285 amino acids to trithorax 4 [Arabidopsis thaliana]
GI:16118405; contains Pfam profiles PF00856: SET domain,
PF00855: PWWP domain; identical to cDNA trithorax 4
(TX4) partial cds GI:16118404
Length = 1027
Score = 34.7 bits (76), Expect = 0.13
Identities = 15/57 (26%), Positives = 23/57 (40%)
Query: 219 ESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDNTWQCPHCK 275
+S +C +C + N V C C + H C Q LK + + CP C+
Sbjct: 396 KSKHICGICKKIRNHLDNKSWVRCDGCKVRIHAECDQISDRHLKDLRETDYYCPTCR 452
Score = 31.5 bits (68), Expect = 1.2
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 275 KTCVICCETNDAGVLTVCSVCSDAYHALC 303
K CVIC + + G T C CS YHA+C
Sbjct: 704 KICVICKQIH--GSCTQCCKCSTYYHAMC 730
>At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 622
Score = 34.7 bits (76), Expect = 0.13
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 219 ESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDNTWQCPHCKTCV 278
+ GVC C V P ++ + C C H+SCL S + D W+CP C V
Sbjct: 10 DGDGVCMRCQVTPP---SEETLTCGTCVTPWHVSCLLPES-LASSTGD--WECPDCSGVV 63
Query: 279 ICCETNDAGV 288
+ G+
Sbjct: 64 VPSAAPGTGI 73
>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
identical to chromatin remodeling factor CHD3
[Arabidopsis thaliana] GI:6478518
Length = 1384
Score = 33.5 bits (73), Expect = 0.30
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 277 CVICCETNDAGVLTVCSVCSDAYHALCHAPQIPDRLKAWDQWECNNCL 324
C C E+ + L C+ C+ A+HA C P + D + + W C C+
Sbjct: 52 CQACGESTN---LVSCNTCTYAFHAKCLVPPLKD--ASVENWRCPECV 94
Score = 31.1 bits (67), Expect = 1.6
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 234 GSNDRLVECRDCSNKAHISCLQSGSNILKPRPDNTWQCPHC 274
G + LV C C+ H CL LK W+CP C
Sbjct: 56 GESTNLVSCNTCTYAFHAKCLVPP---LKDASVENWRCPEC 93
>At2g02700.1 68415.m00210 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 499
Score = 33.5 bits (73), Expect = 0.30
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 224 CSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKP-RPDNTWQCPHCKTCVICC- 281
CS+C +K C +C + H C++S I P ++ Q + KT C
Sbjct: 130 CSICNTRKV---GTCYYFCVECDQRYHKECVESPLEINYPSHVKHSLQLYNVKTFEHCIL 186
Query: 282 ETNDAGVLTV-CSVCSDAYHALCHAPQIP 309
T A VL C++C H LC +IP
Sbjct: 187 STKKAEVLLYYCALCDIYMHVLCAQAKIP 215
>At1g44050.1 68414.m05082 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 530
Score = 33.5 bits (73), Expect = 0.30
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 242 CRDCSNKAHISCLQSGSNILKP-RPDNTWQCPHCKTCVI--CCETNDAGVLTVCSVCSDA 298
C C K H C++S I P P ++ + +T + CC G+ C+ C+ +
Sbjct: 11 CLQCQGKFHKECVESPPEIKHPSHPFHSLRLCSFQTRLTSGCCRKITFGMFYQCTTCNLS 70
Query: 299 YHALCHAPQIP 309
H +C +P
Sbjct: 71 MHPVCAMRPVP 81
Score = 29.5 bits (63), Expect = 4.8
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 238 RLVECRDCSNKAHISCLQSGSNILKPRPD 266
R +C DCS H+ CL +KP D
Sbjct: 444 RFYKCNDCSTALHVDCLLGVDMYMKPITD 472
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 33.1 bits (72), Expect = 0.39
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 242 CRDCSNKAHISCLQSGSNILKP-RPDNTWQC---PHCKTCVICCETNDAGVLTVCSVCSD 297
C C H C++S I+ P P ++ + P + C ICC + CS C
Sbjct: 106 CLICEKMFHKECVESPFEIIHPSHPFHSLRLTSSPQSQNC-ICCHHYFNDIFYHCSTCKL 164
Query: 298 AYHALCHAPQIP 309
H +C IP
Sbjct: 165 IMHPICAMRSIP 176
>At5g20885.1 68418.m02480 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 176
Score = 33.1 bits (72), Expect = 0.39
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
Query: 224 CSVCLVQKPRGSNDRLVECRDCSNKAHISCLQ--------SGSNILKPRPDNTWQCPHCK 275
C+VCL G D + E R+CS+ H C+ G + DN CP C+
Sbjct: 82 CAVCLGDLEDG--DEVRELRNCSHMFHRECIDRWLDYECCGGDENNEGEEDNHRTCPLCR 139
Query: 276 TCVICCETNDAG 287
T ++ T G
Sbjct: 140 TPLLAANTTSCG 151
>At4g10370.1 68417.m01702 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 687
Score = 33.1 bits (72), Expect = 0.39
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 242 CRDCSNKAHISCLQSGSNILKP----RPDNTWQCPHCKTCVICCETNDAGVLTVCSVCSD 297
C C K H C++S I P + P + C ICC+T + C C+
Sbjct: 147 CLQCEKKFHKECVESPLEIKHPTHLFHSLRLYYHPAPEFC-ICCKTEVFMIFYHCLTCNL 205
Query: 298 AYHALCHAPQIP 309
+ H +C ++P
Sbjct: 206 SMHPVCAMRKVP 217
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 33.1 bits (72), Expect = 0.39
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 277 CVICCET-NDAGVLTVCSVCSDAYHALCHAPQIPDRLKAWDQWECNNCLES 326
C IC T N+ L +C C AYH C + +W C+ C+++
Sbjct: 48 CQICEVTINEMDTLLICDACEKAYHLKCLQGNNMKGVPK-SEWHCSRCVQA 97
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 33.1 bits (72), Expect = 0.39
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 277 CVICCET-NDAGVLTVCSVCSDAYHALCHAPQIPDRLKAWDQWECNNCLES 326
C IC T N+ L +C C AYH C + +W C+ C+++
Sbjct: 309 CQICEVTINEMDTLLICDACEKAYHLKCLQGNNMKGVPK-SEWHCSRCVQA 358
>At5g55770.1 68418.m06951 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 695
Score = 32.7 bits (71), Expect = 0.52
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 224 CSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKP-RPDNT---WQCPHCKTCVI 279
C C + S D C C K H C++S I P P ++ + P + C
Sbjct: 156 CGACKGKMLDTSKD--YACLQCQRKFHRECVESPLEIKHPSHPFHSLRLYGLPTFQKC-F 212
Query: 280 CCETNDAGVLTVCSVCSDAYHALCHAPQIP 309
CCET+ + C+ C + +C +P
Sbjct: 213 CCETSLYDMFYHCATCDLSMSPVCALKPVP 242
>At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 617
Score = 32.7 bits (71), Expect = 0.52
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 212 EDSLPHEESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDNTWQC 271
E LP + GVC C V P ++ + C C H+ CL S W+C
Sbjct: 4 ETQLPCD-GDGVCMRCQVNPP---SEETLTCGTCVTPWHVPCLLPES---LASSTGEWEC 56
Query: 272 PHCKTCVI 279
P C V+
Sbjct: 57 PDCSGVVV 64
>At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD finger
protein-related contains Pfam profiles PF03107: DC1
domain, weak hit to PF00628: PHD-finger
Length = 513
Score = 32.7 bits (71), Expect = 0.52
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 233 RGSNDRLVECRDCSNKAHISCLQSGSNILKPRP---DNTWQC-PH--CKTCVICCETNDA 286
R +++ + C C H+ C Q+ +P D+T P TC +C N
Sbjct: 63 RKAHNIIYYCDVCDIYMHVLCAQATIPFFIDQPKRHDHTLTLFPRQASLTCNVCGLVNKL 122
Query: 287 GVLTVCSVCSDAYHALC-HAPQ 307
+ VCS+C+ A H+ C H PQ
Sbjct: 123 HLTYVCSICNFAAHSDCIHIPQ 144
Score = 32.7 bits (71), Expect = 0.52
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 218 EESGGV--CSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDNTWQCPHCK 275
+E+GG C +C + G + +C C HI+CL LK PD T +
Sbjct: 413 DEAGGSDWCELCEGKLAIGGKEGFYKCTYCCTTLHINCLLGPDPYLK--PDQTIPTDQIE 470
Query: 276 TCVICCETNDAGVLTVCSVCS 296
+ + N++ +CS C+
Sbjct: 471 ---VVLQRNNSASRQICSKCN 488
Score = 31.5 bits (68), Expect = 1.2
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 242 CRDCSNKAHISCLQSGSNILKP-RPDNTWQC----PHCKTCVICCETNDAGVLTVCSVCS 296
C C + H C++S I P P ++ Q + C++C ++ C VC
Sbjct: 18 CVTCDERYHKECVESPLEITYPSHPQHSLQIYLSTKPFEHCILCSRKAH-NIIYYCDVCD 76
Query: 297 DAYHALCHAPQIP 309
H LC IP
Sbjct: 77 IYMHVLCAQATIP 89
>At1g79350.1 68414.m09247 DNA-binding protein, putative contains
Pfam PF00628: PHD-finger domain; contains TIGRFAMS
TIGR01053: zinc finger domain, LSD1 subclass; contains
Pfam PF00271: Helicase conserved C-terminal domain;
similar to WSSV086 (GI:19481678)[shrimp white spot
syndrome virus]; similar to nuclear protein Np95
(GI:17939938) [Mus musculus]
Length = 1299
Score = 32.7 bits (71), Expect = 0.52
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 12/80 (15%)
Query: 196 SESQFSLDGSGDEIDQEDSLPHEESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQ 255
SE+ +S D + D D +D +C +C + R +L+ C +C H C+
Sbjct: 682 SENMYSADSADDSNDSDDEFQ------ICQICSGEDER---KKLLHCSECDKLFHPDCVV 732
Query: 256 SGSNILKPRPDNTWQCPHCK 275
L P W C CK
Sbjct: 733 PPVIDL---PSEAWICFSCK 749
Score = 30.7 bits (66), Expect = 2.1
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 277 CVICCETNDAGVLTVCSVCSDAYHALCHAPQIPDRLKAWDQWECNNCLE 325
C IC ++ L CS C +H C P + D + W C +C E
Sbjct: 704 CQICSGEDERKKLLHCSECDKLFHPDCVVPPVIDLPS--EAWICFSCKE 750
>At5g63900.1 68418.m08023 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 557
Score = 32.3 bits (70), Expect = 0.69
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 224 CSVC-LVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPR 264
C +C ++ P +N +L+ C C + H++CL+ S I+ R
Sbjct: 301 CDICGSMESP--ANSKLMACEQCQRRFHLTCLKEDSCIVSSR 340
Score = 31.9 bits (69), Expect = 0.91
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 271 CPHCKTCVICCETNDAGVLTVCSVCSDAYHALC-HAPQIPDRLKAWDQWECNNC 323
C C +CC + G L +C C A+H C +P+ D W C C
Sbjct: 250 CSPDMNCDVCCVCHWGGDLLLCDGCPSAFHHACLGLSSLPEE----DLWFCPCC 299
>At2g02680.1 68415.m00207 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 649
Score = 32.3 bits (70), Expect = 0.69
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 224 CSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDN-TWQC----PHCKTCV 278
C +C +K G++ C +C + H C++S I P N ++Q K C+
Sbjct: 138 CVICRAEKV-GTD--YYYCVECDMRYHKECVESPLRINYPSHANHSFQLYSSKKRFKYCI 194
Query: 279 ICCETNDAGVLTVCSVCSDAYHALCHAPQIP 309
+C + + G++ C++C H LC IP
Sbjct: 195 MCRKKVN-GLVYYCALCDMYMHTLCAQAVIP 224
Score = 31.9 bits (69), Expect = 0.91
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 224 CSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKP 263
C +C + G +C DC HI+CL + LKP
Sbjct: 553 CELCEGKLSTGGEKGFYKCDDCCTTLHINCLLGPNPFLKP 592
>At1g61840.1 68414.m06978 DC1 domain-containing protein similar to
hypothetical protein GI:3184279 from [Arabidopsis
thaliana]; contains Pfam profile PF03107: DC1 domain
Length = 814
Score = 32.3 bits (70), Expect = 0.69
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 242 CRDCSNKAHISCLQSGSNILKP-RPDNTWQCPHCKTCV-----ICCETNDAGVLTVCSVC 295
C C H C+QS +I P P+++ Q + +CC T ++ C++C
Sbjct: 316 CVYCDKIYHKECVQSPISIKHPYHPEHSLQLSYRLPSAPDIECLCCGTTATDLVYGCTIC 375
Query: 296 SDAYHALCHAPQIP 309
H C IP
Sbjct: 376 EAVMHTPCAMKSIP 389
Score = 30.7 bits (66), Expect = 2.1
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 242 CRDCSNKAHISCLQSGSNILKP-RPDNTWQCPHCKTCV-----ICCETNDAGVLTVCSVC 295
C C + H C+QS I P P+++ Q + CC ++ C++C
Sbjct: 126 CVHCDSIYHKECVQSPFKIEHPYHPEHSLQLSYLDLNARIMECFCCGRRATYLVYYCTIC 185
Query: 296 SDAYHALCHAPQIP 309
H +C IP
Sbjct: 186 DVLMHTVCAMKSIP 199
>At2g40050.1 68415.m04921 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 609
Score = 31.9 bits (69), Expect = 0.91
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 219 ESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKP-RPDNTWQC-----P 272
++ G C +C + S C CS K H C+QS I P P++ Q
Sbjct: 95 DADGGCYIC---EGSNSGTDYYFCNYCSIKLHKECIQSPLIIKHPYHPEHYLQLFFHDDN 151
Query: 273 HCKTCVICCETNDAGVLTVCSVCSDAYHALCHAPQIP 309
K +CC ++ C+ C H +C IP
Sbjct: 152 FRKIECLCCGRKAHWLIYHCTTCQAFMHPICAMKPIP 188
Score = 29.1 bits (62), Expect = 6.4
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 242 CRDCSNKAHISCLQSGSNILKP-RPDNTWQC 271
C +C HI CL G +KP + N W C
Sbjct: 539 CNECCTTFHIECLIGGDPYIKPGQYFNKWVC 569
>At5g53430.1 68418.m06640 PHD finger family protein / SET
domain-containing protein (TX5) contains Pfam domain,
PF00628: PHD-finger and PF00856: SET domain; identical
to cDNA trithorax 5 (TX5) partial cds GI:16118406
Length = 1043
Score = 31.5 bits (68), Expect = 1.2
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 275 KTCVICCETNDAGVLTVCSVCSDAYHALC 303
K CVIC + + G T C CS YHA+C
Sbjct: 719 KICVICKQIH--GSCTQCCKCSTYYHAMC 745
Score = 28.7 bits (61), Expect = 8.5
Identities = 14/54 (25%), Positives = 20/54 (37%)
Query: 223 VCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDNTWQCPHCKT 276
VC +C + V C C H +C Q K + + CP C+T
Sbjct: 415 VCGICKRIWNHLDSQSWVRCDGCKVWIHSACDQISHKHFKDLGETDYYCPTCRT 468
>At4g37880.1 68417.m05357 expressed protein
Length = 388
Score = 31.5 bits (68), Expect = 1.2
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 226 VCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDNTWQCPHCKTCV 278
VC V K + S+D C H+ C Q+ + + K ++++CP+C T V
Sbjct: 329 VCPVSKEQSSDDNPPMMMSCG---HVLCKQTINKMSKNGSKSSFKCPYCPTDV 378
>At3g05545.1 68416.m00609 transcription factor, putative / zinc
finger (C3HC4 type RING finger) family protein similar
to VIP2 protein [Avena fatua] gi|6996144|emb|CAB75506;
contains Pfam domain PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 425
Score = 31.5 bits (68), Expect = 1.2
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 204 GSGDEIDQEDSLPHEESGG----VCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSN 259
G D D+ +E G CS+CL + + DR C ++ H+ C+ S N
Sbjct: 13 GDNDLADEASGADGDEGDGFGSVACSICLETVVK-NGDRAWANLQCDHQFHLDCIGSAFN 71
Query: 260 ILKPRPDNTWQCPHCK 275
QCP+C+
Sbjct: 72 -----AKGVMQCPNCR 82
>At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger)
family protein similar to BRCA1-associated protein 2
[Homo sapiens] GI:3252872; contains Pfam profiles
PF00097: Zinc finger, C3HC4 type (RING finger), PF02148:
Zn-finger in ubiquitin-hydrolases and other protein
Length = 461
Score = 31.5 bits (68), Expect = 1.2
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
Query: 204 GSGDEIDQEDSLPHEESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKP 263
GS D + P E+ C VCL + + + L C++ H SC+ + + P
Sbjct: 149 GSIDHTQPSAAGPIEQP--TCPVCLERLDQDTGGILTTM--CNHSFHCSCISNWPDSSCP 204
Query: 264 RPDNTWQCPHCKTCVICCETNDAGVLTVCSVCSDAYHALCHA 305
Q P C +C T + + +C V + HA
Sbjct: 205 VCRYCQQQPENSVCCVCQTTENLWMCVICGVVGCGRYKEGHA 246
>At2g02640.1 68415.m00203 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 31.5 bits (68), Expect = 1.2
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Query: 216 PHEESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKP-RPDNTWQCPHC 274
P E G C C +Q G++ C C + H C++ I P ++ Q +
Sbjct: 111 PEAEEGDECYSCSIQTI-GTDYYF--CATCDKRFHKECVECPLEISYPTHTKHSLQLFYS 167
Query: 275 K---TCVICCETNDAGVLTVCSVCSDAYHALCHAPQIP 309
K I C ++ C++C H LC +IP
Sbjct: 168 KYRFDHCIYCRKRATYMIYFCALCDSYMHVLCAQSKIP 205
Score = 29.1 bits (62), Expect = 6.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 224 CSVCLVQKPRGSNDRLVECRDCSNKAHISCL 254
C +C + G + C+DC HI+CL
Sbjct: 533 CELCEGKLSIGGKEGFYNCKDCCTTLHINCL 563
>At2g02610.1 68415.m00200 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 31.5 bits (68), Expect = 1.2
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Query: 216 PHEESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKP-RPDNTWQCPHC 274
P E G C C +Q G++ C C + H C++ I P ++ Q +
Sbjct: 111 PEAEEGDECYSCSIQTI-GTDYYF--CATCDKRFHKECVECPLEISYPTHTKHSLQLFYS 167
Query: 275 K---TCVICCETNDAGVLTVCSVCSDAYHALCHAPQIP 309
K I C ++ C++C H LC +IP
Sbjct: 168 KYRFDHCIYCRKRATYMIYFCALCDSYMHVLCAQSKIP 205
Score = 29.5 bits (63), Expect = 4.8
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 224 CSVCLVQKPRGSNDRLVECRDCSNKAHISCL 254
C +C + G + +C+DC HI+CL
Sbjct: 533 CELCEGKLAIGGKEGFYKCKDCCTTLHINCL 563
>At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger)
family protein contains Pfam PF03126: Plus-3 domain;
contains Pfam PF02201: BAF60b domain of the SWIB
complex; contains Pfam PF00628: PHD-finger domain;
contains Prosite Zinc finger, C3HC4 type (RING finger),
signature; similar to CPRF interacting protein
(GI:9588690) [Petroselinum crispum]
Length = 571
Score = 31.1 bits (67), Expect = 1.6
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 16/120 (13%)
Query: 208 EIDQEDSLPHEESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDN 267
EI ++ +E C +C G N L + +DC H SC++ S+ K +
Sbjct: 9 EILDDEEEDEKECEDWCFIC----KDGGNLMLCDFKDCPKVYHESCVEKDSSASK--NGD 62
Query: 268 TWQCPHCKTCVICCETNDAGVLTVCSVCSDAYHALC--HAPQIPDRLKAWDQWECNNCLE 325
++ C +C +C +T C CS A C HA I +LK D+ CN C E
Sbjct: 63 SYIC-MWHSCYLCKKTPK----LCCLCCSHAVCEGCVTHAEFI--QLKG-DKGLCNQCQE 114
>At5g44180.1 68418.m05406 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7/homeotic
protein Hox7 (GI:19486) {Lycopersicon peruvianum};
similar to GP|4165087| Williams-Beuren syndrome deletion
transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
domain and Pfam PF00046: Homeobox domain
Length = 1694
Score = 31.1 bits (67), Expect = 1.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 346 QNSPNVDPFLKPHELDRAPSKLSMDTPIDPSIPD 379
+N V+P L+ +LD P K + P+ PS+P+
Sbjct: 831 ENLIGVEPLLENGKLDTVPMKTELGLPLTPSLPE 864
>At5g42840.1 68418.m05221 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 671
Score = 31.1 bits (67), Expect = 1.6
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 14/113 (12%)
Query: 218 EESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCL-------QSGSNI---LKPRPDN 267
E++ G C + ++ C+DC HI C+ + G I ++ P+N
Sbjct: 554 EKASGKCWCDICERETNPKSWFYTCKDCGVTFHIFCVVWDIRFSKQGETIRDGVELLPNN 613
Query: 268 TWQCPHCKTCVICCETNDAGVLTVCSVCSDAYHALCHAPQIPDRLKAWDQWEC 320
T P CK C C V ++C +Y+ C+A ++ W ++ C
Sbjct: 614 TSSRPLCKNCQCRC-LGPFFVKDYDNICYCSYY--CYA-RLHSLRYIWSKFRC 662
>At3g26550.1 68416.m03314 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 681
Score = 31.1 bits (67), Expect = 1.6
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 242 CRDCSNKAHISCLQSGSNILKP-RPDNT---WQCPHCKTCVICCETNDAGVLTVCSVCSD 297
C +C NK H C++S I P P ++ + P C ICC + + C C
Sbjct: 140 CLECGNKFHKQCVESPLEIKHPSHPFHSLRLYSHPTHMVC-ICCGRLVSNMFYHCVTCDL 198
Query: 298 AYHALCHAPQIP 309
+ +C IP
Sbjct: 199 SMDPICAMEPIP 210
>At3g02890.1 68416.m00284 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 963
Score = 31.1 bits (67), Expect = 1.6
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 275 KTCVICCETNDAGVLTVCSVCSD-AYHALCHAPQIPDRLKAWDQWECNNC 323
K C C + +L +CS CSD A H C + K + W C C
Sbjct: 203 KVCDTCGDAGREDLLAICSRCSDGAEHTYCMRVMLKKVPKGY--WLCEEC 250
Score = 30.3 bits (65), Expect = 2.8
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 223 VCSVCLVQKPRGSNDRLVECRDCSNKA-HISCLQSGSNILKPRPDNTWQCPHCK 275
VC C G D L C CS+ A H C++ +LK P W C CK
Sbjct: 204 VCDTC---GDAGREDLLAICSRCSDGAEHTYCMRV---MLKKVPKGYWLCEECK 251
>At2g36720.1 68415.m04505 PHD finger transcription factor, putative
Length = 1007
Score = 31.1 bits (67), Expect = 1.6
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 9/48 (18%)
Query: 277 CVICCETNDAGVLTVCSVCSDAYHALC-HAPQIPDRLKAWDQWECNNC 323
CVIC D G L +C C A+H C P IP W C C
Sbjct: 618 CVICA---DGGNLLLCDSCPRAFHIECVSLPSIPR-----GNWHCKYC 657
Score = 29.5 bits (63), Expect = 4.8
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 239 LVECRDCSNKAHISCLQSGSNI-LKPRPDNTWQC 271
++ C C + HI CL S + + LK P W C
Sbjct: 724 IIICDQCEKEYHIGCLSSQNIVDLKELPKGNWFC 757
>At2g02630.1 68415.m00202 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 440
Score = 31.1 bits (67), Expect = 1.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 224 CSVCLVQKPRGSNDRLVECRDCSNKAHISCL 254
C +C + G + EC+DC HI+CL
Sbjct: 340 CELCEGKLAIGGKEGFYECKDCCTTLHINCL 370
>At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 642
Score = 31.1 bits (67), Expect = 1.6
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 219 ESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDNTWQCPHC 274
+ GVC C P + + C C H+SCL S L W CP C
Sbjct: 10 DGDGVCMRCKSNPPP---EESLTCGTCVTPWHVSCLSSPPKTLASTLQ--WHCPDC 60
>At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 645
Score = 31.1 bits (67), Expect = 1.6
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 219 ESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDNTWQCPHC 274
+ GVC C P + + C C H+SCL S L W CP C
Sbjct: 10 DGDGVCMRCKSNPPP---EESLTCGTCVTPWHVSCLSSPPKTLASTLQ--WHCPDC 60
>At5g54480.1 68418.m06784 hypothetical protein
Length = 720
Score = 30.7 bits (66), Expect = 2.1
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 36 DLIKAASDQESKYSKKQLENIVNKELSSGSLVKLPNGNLALGP-ADHDVDSSDSFRFESN 94
+LIKAA D ++ L + S +L + + +L + P +D D SSD S+
Sbjct: 23 ELIKAARDARYHLARSHLLYFKSLLDFSKALKQFLHKDLVVIPYSDDDSSSSDIICSGSD 82
Query: 95 ADSNTKMTSSANSSC 109
+DS+T S ++S C
Sbjct: 83 SDSDTDSDSDSDSDC 97
>At5g43200.1 68418.m05278 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 finger protein
RHY1a [Arabidopsis thaliana] GI:3790593; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 207
Score = 30.7 bits (66), Expect = 2.1
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 208 EIDQEDSLPHEESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCL 254
++DQE S EE C++CL + ++D E +C++ H CL
Sbjct: 140 DLDQEMSQGEEEESKTCAICL--EELSTSDDYCELPNCTHCFHEPCL 184
>At5g46670.1 68418.m05751 CHP-rich zinc finger protein, putative
contains similarity to CHP-rich zinc finger protein
Length = 332
Score = 30.3 bits (65), Expect = 2.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 238 RLVECRDCSNKAHISCLQSGSNILKP 263
R +C DC HI CL G +KP
Sbjct: 236 RFYKCNDCCTTLHIDCLFGGDMYMKP 261
>At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 706
Score = 30.3 bits (65), Expect = 2.8
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 356 KPHELDRAPSKLSMDTPIDPSIPDITH--WNTDDVFEYFS 393
KPH D + + PIDPS+PDI ++TD+ F FS
Sbjct: 224 KPHGTDVTFASEKKEYPIDPSLPDIKSGIYSTDE-FRMFS 262
>At3g09760.1 68416.m01156 zinc finger (C3HC4-type RING finger)
family protein ; contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 491
Score = 30.3 bits (65), Expect = 2.8
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 167 RGRPVGSLNKSTIKKRLMVAGHIKDDAPLSESQFSLDGSGDEIDQEDSLPHEESGGVCSV 226
R R V + NK +++L V + +S ++ ++ + +D + +P EE+ VC +
Sbjct: 212 RSRSVPAFNKDGSQRQLGVF-RVIPTPNMSPTRNTIKLNDANVDGAEDVPEEEA--VCRI 268
Query: 227 CLVQKPRGSNDRLVEC 242
CLV+ S +EC
Sbjct: 269 CLVELGEDSEAFKMEC 284
>At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family
protein
Length = 1332
Score = 29.9 bits (64), Expect = 3.7
Identities = 37/146 (25%), Positives = 55/146 (37%), Gaps = 20/146 (13%)
Query: 174 LNKSTIKKRLMVAGHIKDDAPLSESQFSLDGSGDEIDQEDSLPHEESGGVCSVC----LV 229
L K K+RL + KDD + + + DE+D ED E VC++C +
Sbjct: 178 LTKKPTKRRLPDEDNAKDDFIVGDEDTYVASDEDELDDEDDDFFE---SVCAICDNGGEI 234
Query: 230 QKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDNTWQCPHCK----TCVIC----C 281
GS R + + C G N ++ + CP+C+ C IC
Sbjct: 235 LCCEGSCLRSFHATKKDGEDSL-CDSLGFNKMQVEAIQKYFCPNCEHKIHQCFICKNLGS 293
Query: 282 ETNDAGVLTV--C--SVCSDAYHALC 303
N +G V C + C YH C
Sbjct: 294 SDNSSGAAEVFQCVSATCGYFYHPHC 319
>At5g26190.1 68418.m03116 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 556
Score = 29.9 bits (64), Expect = 3.7
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 224 CSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDNTWQCPHCKTCVICCET 283
C +C +KP C C + HI C+ S + RP +++ + V+
Sbjct: 453 CEIC--EKPTDPRKWFYSCDKCCSTLHIDCVLGKSPYM--RPGHSFLLCSREFQVVSNNH 508
Query: 284 NDAGVLTVCSV-CSDAY 299
T+CS+ C DA+
Sbjct: 509 TSRPFCTICSLRCKDAF 525
>At5g24870.2 68418.m02943 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 520
Score = 29.9 bits (64), Expect = 3.7
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 12/92 (13%)
Query: 185 VAGHIKDDAPLSESQFSLDGSGDEIDQEDSLPHEESGGVCSVCLVQKPRGSNDRLVECRD 244
V+ + ++A L + S+ DE D D +++ CS+C + G V
Sbjct: 431 VSTALSEEALLKSLKSSIYRPNDESD--DICLNKDDDVKCSICQEEYVDGDE---VGTLP 485
Query: 245 CSNKAHISCLQSGSNILKPRPDNTWQCPHCKT 276
C +K H+SC Q + W CP CKT
Sbjct: 486 CQHKYHVSCAQQWLRM------KNW-CPICKT 510
>At5g24870.1 68418.m02942 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 520
Score = 29.9 bits (64), Expect = 3.7
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 12/92 (13%)
Query: 185 VAGHIKDDAPLSESQFSLDGSGDEIDQEDSLPHEESGGVCSVCLVQKPRGSNDRLVECRD 244
V+ + ++A L + S+ DE D D +++ CS+C + G V
Sbjct: 431 VSTALSEEALLKSLKSSIYRPNDESD--DICLNKDDDVKCSICQEEYVDGDE---VGTLP 485
Query: 245 CSNKAHISCLQSGSNILKPRPDNTWQCPHCKT 276
C +K H+SC Q + W CP CKT
Sbjct: 486 CQHKYHVSCAQQWLRM------KNW-CPICKT 510
>At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contains
Pfam domains PF00628: PHD-finger and PF00855: PWWP
domain; identical to cDNA trithorax 3 (ATX3) partial cds
GI:15217142
Length = 799
Score = 29.9 bits (64), Expect = 3.7
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 194 PLSESQFSLDGSGDEIDQEDSLPHEESGGVCSVCL-VQKPRGSNDRLVECRDCSNKAHIS 252
PL + + D +E+ + +S C +C + P D V C C H
Sbjct: 321 PLKSLKRTKDSQPEELLCKHCSKLRKSNQYCGICKRIWHPSDDGD-WVCCDGCDVWVHAE 379
Query: 253 CLQSGSNILKPRPDNTWQCPHCK 275
C + K N + CP CK
Sbjct: 380 CDNITNERFKELEHNNYYCPDCK 402
>At3g21210.1 68416.m02680 universal stress protein (USP) family
protein / DC1 domain-containing protein contains Pfam
profiles PF03107: DC1 domain, PF00582: universal stress
protein family
Length = 686
Score = 29.9 bits (64), Expect = 3.7
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 212 EDSLPHEESGG-VCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKP 263
ED +ESG +C VC +K + + C DC+ H+ CL + P
Sbjct: 599 EDFSGSQESGPHLCEVC--EKQANPKNGVYMCNDCNVTLHVECLLGKEMYMMP 649
>At2g37520.1 68415.m04601 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 854
Score = 29.9 bits (64), Expect = 3.7
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 236 NDR-LVECRDCSNKAHISCL-QSGSNILKPRPDNTWQCPHCKTC 277
+DR ++ C C + H+ CL ++G LK P W C C C
Sbjct: 589 DDRTVILCDQCEKEYHVGCLRENGFCDLKEIPQEKWFC--CSNC 630
>At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative
contains similarity to CHP-rich zinc finger protein
Length = 305
Score = 29.5 bits (63), Expect = 4.8
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 5/73 (6%)
Query: 242 CRDCSNKAHISCLQSGSNILKP-RPDNTWQC----PHCKTCVICCETNDAGVLTVCSVCS 296
C C H C+QS I P P ++ + KTC C N +L C+
Sbjct: 140 CLQCQKNFHKECVQSPLEIKHPSHPFHSLRLYSYLKDFKTCFCCKVFNSMVMLYHCTTWD 199
Query: 297 DAYHALCHAPQIP 309
+ H +C IP
Sbjct: 200 LSMHTVCAMRSIP 212
>At5g42080.2 68418.m05123 GTP-binding protein / phragmoplastin,
putative strong similarity to GTP-binding protein
[Arabidopsis thaliana] GI:807577, phragmoplastin SDL5A
[Glycine max] GI:1218004; contains Pfam profiles
PF01031: Dynamin central region, PF00350: Dynamin family
Length = 429
Score = 29.5 bits (63), Expect = 4.8
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 37 LIKAASDQESKYSKKQLENIVNKELSSGSLVKLPNGN-LALGPADHDVDSSDSFRFESNA 95
L K A D +S K +EN+V S ++ PN LA+ PA+ D+ +SD+ +
Sbjct: 146 LTKVAVDGQSDSIVKDIENMVR------SYIEKPNCIILAISPANQDLATSDAIKISREV 199
Query: 96 DSNTKMT 102
D + T
Sbjct: 200 DPSGDRT 206
>At5g42080.1 68418.m05122 GTP-binding protein / phragmoplastin,
putative strong similarity to GTP-binding protein
[Arabidopsis thaliana] GI:807577, phragmoplastin SDL5A
[Glycine max] GI:1218004; contains Pfam profiles
PF01031: Dynamin central region, PF00350: Dynamin family
Length = 610
Score = 29.5 bits (63), Expect = 4.8
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 37 LIKAASDQESKYSKKQLENIVNKELSSGSLVKLPNGN-LALGPADHDVDSSDSFRFESNA 95
L K A D +S K +EN+V S ++ PN LA+ PA+ D+ +SD+ +
Sbjct: 146 LTKVAVDGQSDSIVKDIENMVR------SYIEKPNCIILAISPANQDLATSDAIKISREV 199
Query: 96 DSNTKMT 102
D + T
Sbjct: 200 DPSGDRT 206
>At5g24330.1 68418.m02867 PHD finger family protein / SET
domain-containing protein contains Pfam domain, PF00628:
PHD-finger and PF00856: SET domain
Length = 349
Score = 29.5 bits (63), Expect = 4.8
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 223 VCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDNTWQCPHC 274
VC C K +L+ C C H+ CL+ IL P +W CP C
Sbjct: 34 VCEECSSGKQPA---KLLLCDKCDKGFHLFCLRP---ILVSVPKGSWFCPSC 79
>At5g01730.1 68418.m00091 expressed protein
Length = 1192
Score = 29.5 bits (63), Expect = 4.8
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 26 SYLENGIAFDDLIKAASDQESKYSKKQLENIVNKELSSGSLVKLPNGNLALGPADHD 82
S LE+G+A DL + +S S Q +IV+ + SS V +P+G G DHD
Sbjct: 715 SCLEDGLANPDLAEISS--YSGQEDPQTMSIVSDD-SSDPEVPIPDGTCFAGDVDHD 768
>At3g08500.1 68416.m00985 myb family transcription factor (MYB83)
contains Pfam profile: PF00249: Myb-like DNA-binding
domain
Length = 343
Score = 29.5 bits (63), Expect = 4.8
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 50 KKQLENIVNKELSSGSLVKLPNGNLALGPADHDVD---SSDSFRFESNADSNTKMTSSAN 106
KK+L+N N SSGS N N +L P D VD +S S + + D N +
Sbjct: 131 KKRLKNNSNNNTSSGSSPNNSNSN-SLDPRDQHVDMGGNSTSLMDDYHHDENMMTVGNTM 189
Query: 107 SSCRSSP 113
SSP
Sbjct: 190 RMDSSSP 196
>At2g02470.1 68415.m00186 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 256
Score = 29.5 bits (63), Expect = 4.8
Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 16/125 (12%)
Query: 150 AKKVFDPSDNNVPSKRKRGRPVGSLNKSTIKKRLMVAGHIKDDAPLSESQFSLDGSGDEI 209
AK+ D S NN SK K P G KS + L + P E + +E
Sbjct: 141 AKQSKDLSVNNNNSKSK---PSGV--KSRQSESLSKVAKMSSPPPKEEEE-------EED 188
Query: 210 DQEDSLPHEESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDNTW 269
+ ED +E G VC C G+++ + C C H C++ K +
Sbjct: 189 ESEDESEDDEQGAVCGAC--GDNYGTDEFWICCDACEKWFHGKCVK--ITPAKAEHIKHY 244
Query: 270 QCPHC 274
+CP C
Sbjct: 245 KCPTC 249
>At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 660
Score = 29.5 bits (63), Expect = 4.8
Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 222 GVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDNTWQCPHC 274
GVC C P + + C C H+SCL S L W CP C
Sbjct: 13 GVCMRCKSMPPP---EESLTCGTCVTPWHVSCLLSPPETLSATLQ--WLCPDC 60
>At5g66160.2 68418.m08334 protease-associated zinc finger
(C3HC4-type RING finger) family protein contains Pfam
domain, PF02225: protease-associated (PA) domain and
Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
finger); similar to ReMembR-H2 protein JR702
[Arabidopsis thaliana] gi|6942149|gb|AAF32326; identical
to cDNA ReMembR-H2 protein JR700 mRNA, complete cds
GI:6942146
Length = 290
Score = 29.1 bits (62), Expect = 6.4
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 217 HEESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQS 256
H ++G C++CL G + RL+ C+ + H++C+ S
Sbjct: 225 HHKAGETCAICLEDYRFGESLRLLPCQ---HAFHLNCIDS 261
>At5g66160.1 68418.m08335 protease-associated zinc finger
(C3HC4-type RING finger) family protein contains Pfam
domain, PF02225: protease-associated (PA) domain and
Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
finger); similar to ReMembR-H2 protein JR702
[Arabidopsis thaliana] gi|6942149|gb|AAF32326; identical
to cDNA ReMembR-H2 protein JR700 mRNA, complete cds
GI:6942146
Length = 310
Score = 29.1 bits (62), Expect = 6.4
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 217 HEESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQS 256
H ++G C++CL G + RL+ C+ + H++C+ S
Sbjct: 225 HHKAGETCAICLEDYRFGESLRLLPCQ---HAFHLNCIDS 261
>At5g58610.1 68418.m07345 PHD finger transcription factor, putative
Length = 1065
Score = 29.1 bits (62), Expect = 6.4
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 278 VICCETNDAGVLTVCSVCSDAYHALC-HAPQIPDRLKAWDQWECNNC 323
V C + G L +C C A+HA C +PD W C +C
Sbjct: 695 VFCSVCHYGGKLILCDGCPSAFHANCLGLEDVPD-----GDWFCQSC 736
>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
similarity to predicted proteins, Arabidopsis thaliana
Length = 1595
Score = 29.1 bits (62), Expect = 6.4
Identities = 15/48 (31%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 280 CCETNDAGVLTVCSVCSDAYHALCHAPQIPDRLKAWDQWECNNCLESR 327
CC G L C C AYH+ C + L W C C R
Sbjct: 611 CCFCKMDGSLLCCDGCPAAYHSKCVG--LASHLLPEGDWYCPECAFDR 656
Score = 28.7 bits (61), Expect = 8.5
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 239 LVECRDCSNKAHISCLQSGSNILKPRPDNTWQCPHC 274
L+ C C H C+ S++L P+ W CP C
Sbjct: 620 LLCCDGCPAAYHSKCVGLASHLL---PEGDWYCPEC 652
>At4g31200.3 68417.m04431 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein related to DAN26 [Homo
sapiens] gi|1770394|emb|CAA69591
Length = 650
Score = 29.1 bits (62), Expect = 6.4
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 345 GQNSPNVD-PFLKPHELDRA-PSKL-SMDTPIDPSIPDITHWNTDDVFEYFSKHHPEAAP 401
GQ P P L PH L P S P P+ P++ D + EY K+ PE
Sbjct: 88 GQQQPQAFLPHLPPHHLPPPFPGPYDSAPPPPPPADPELQK-RIDKLVEYSVKNGPEFEA 146
Query: 402 ILRDQEFD 409
++RD++ D
Sbjct: 147 MMRDRQKD 154
>At4g31200.2 68417.m04430 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein related to DAN26 [Homo
sapiens] gi|1770394|emb|CAA69591
Length = 650
Score = 29.1 bits (62), Expect = 6.4
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 345 GQNSPNVD-PFLKPHELDRA-PSKL-SMDTPIDPSIPDITHWNTDDVFEYFSKHHPEAAP 401
GQ P P L PH L P S P P+ P++ D + EY K+ PE
Sbjct: 88 GQQQPQAFLPHLPPHHLPPPFPGPYDSAPPPPPPADPELQK-RIDKLVEYSVKNGPEFEA 146
Query: 402 ILRDQEFD 409
++RD++ D
Sbjct: 147 MMRDRQKD 154
>At4g31200.1 68417.m04429 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein related to DAN26 [Homo
sapiens] gi|1770394|emb|CAA69591
Length = 650
Score = 29.1 bits (62), Expect = 6.4
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 345 GQNSPNVD-PFLKPHELDRA-PSKL-SMDTPIDPSIPDITHWNTDDVFEYFSKHHPEAAP 401
GQ P P L PH L P S P P+ P++ D + EY K+ PE
Sbjct: 88 GQQQPQAFLPHLPPHHLPPPFPGPYDSAPPPPPPADPELQK-RIDKLVEYSVKNGPEFEA 146
Query: 402 ILRDQEFD 409
++RD++ D
Sbjct: 147 MMRDRQKD 154
>At4g01930.1 68417.m00257 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 29.1 bits (62), Expect = 6.4
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 13/99 (13%)
Query: 224 CSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPD-NTWQCPHCKTCVICCE 282
C +C +K C+D HI C+ ++L PR N W+ K+ +
Sbjct: 558 CDIC--EKETNPEIWFYTCKDYQASLHIECVVGALSLLMPRSTINPWE----KSYEVV-- 609
Query: 283 TNDAGVLTVCSVCSDAYHALCHAPQIPDRLKAWDQWECN 321
N++ CS C C P I RL + D + C+
Sbjct: 610 LNNSASRPFCSYC----ELRCIFPIILKRLGSSDNYVCS 644
>At3g60870.1 68416.m06809 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 265
Score = 29.1 bits (62), Expect = 6.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 154 FDPSDNNVPSKRKRGRPVGSLNK 176
F + N+ +R RGRP GS NK
Sbjct: 49 FPSGEENIKKRRPRGRPAGSKNK 71
>At3g28620.1 68416.m03572 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 finger protein
RHA2b [Arabidopsis thaliana] GI:3790571; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 211
Score = 29.1 bits (62), Expect = 6.4
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 208 EIDQEDSLPHEESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDN 267
+ DQE EE C++CL R ++ E CS+ H CL R +N
Sbjct: 144 DFDQESQQEEEEESKTCAICLENLLR--SEDYCEMPTCSHYFHEPCLTEWLT----RDNN 197
Query: 268 TWQCPHCK 275
+ CP C+
Sbjct: 198 S--CPLCR 203
>At1g20900.1 68414.m02617 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 311
Score = 29.1 bits (62), Expect = 6.4
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 155 DPS-DNNVPSKRKRGRPVGSLNKS 177
DP+ ++ P KR RGRP GS NK+
Sbjct: 76 DPNTSSSAPGKRPRGRPPGSKNKA 99
>At5g57640.1 68418.m07201 hypothetical protein
Length = 226
Score = 28.7 bits (61), Expect = 8.5
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 190 KDDAPLSESQFSLDGSGDEIDQ----EDSLPHEESGGVCSVCLVQKPRGSNDRLVECRDC 245
+D + ES+ ++ GDE + ED EE G C +C K + E +C
Sbjct: 46 EDQVDVKESKTLIEDQGDEEESKTLDEDLDETEEESGECPLCQFIKGGECKEAFTELENC 105
Query: 246 SNKA 249
++A
Sbjct: 106 CDEA 109
>At5g37270.1 68418.m04477 zinc finger (C3HC4-type RING finger)
family protein ow similarity to RING-H2 finger protein
RHA3b [gi:3790575], RHA1a [gi:3790554]; contains Pfam
domain zinc finger, C3HC4 type (RING finger) PF00097
Length = 208
Score = 28.7 bits (61), Expect = 8.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 218 EESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCL 254
+E CS+CL +D ++ DC + H SC+
Sbjct: 147 DEEETTCSICLEDFSESHDDNIILLPDCFHLFHQSCI 183
>At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1072
Score = 28.7 bits (61), Expect = 8.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 145 ERRKMAKKVFDPSDNNVPSKRKRGRPVGSLNKSTIKKR 182
ER + A+K S + PSKR GR S +KKR
Sbjct: 1019 ERERQARKEKKLSKSATPSKRPSGRQANESPSSLLKKR 1056
>At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1069
Score = 28.7 bits (61), Expect = 8.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 145 ERRKMAKKVFDPSDNNVPSKRKRGRPVGSLNKSTIKKR 182
ER + A+K S + PSKR GR S +KKR
Sbjct: 1019 ERERQARKEKKLSKSATPSKRPSGRQANESPSSLLKKR 1056
>At5g02340.1 68418.m00157 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 631
Score = 28.7 bits (61), Expect = 8.5
Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
Query: 217 HEESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPR-PDNTWQ---CP 272
++E G C K C C K H C++S I P P + Q P
Sbjct: 101 NKEPNGADFCCSACKITNLGTAYYFCTTCRKKFHKECVESPLEIKHPSYPFQSLQLYSSP 160
Query: 273 HCKTCVICCETNDAGVLTVCSVCSDAYHALCHAPQIP 309
ICC+ + ++ S + H +C +P
Sbjct: 161 FALVNCICCDISFQDMIYHSSTYKLSMHPVCAMKPVP 197
>At4g14250.1 68417.m02198 UBX domain-containing protein low
similarity to 60S ribosomal protein L2 [Nicotiana
tabacum] GI:9230281; contains Pfam profile PF00789: UBX
domain
Length = 724
Score = 28.7 bits (61), Expect = 8.5
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 206 GDEIDQEDSLPHEESGGVCSVCLVQKPRGSNDRLVECRDC 245
GDE + D + EE V V L ++P+G DR V C C
Sbjct: 612 GDEYEDPDEVKEEEICLVFPV-LTEEPKGDCDRSVVCSLC 650
>At2g46225.1 68415.m05748 expressed protein
Length = 298
Score = 28.7 bits (61), Expect = 8.5
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 4/103 (3%)
Query: 156 PSDNNVPSKRKRGRPVGSLNKSTIKKRLMVAGHIKDDAPLSESQ--FSLDGSGDEIDQED 213
PSD P+ + +GS KST+K VA KD S++ F L G + I +
Sbjct: 172 PSD--APASKSLSWHLGSETKSTLKGTSTVAPSSKDSKAFSKTSGVFHLLGDDENIANKK 229
Query: 214 SLPHEESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQS 256
L + GV + K L R N +Q+
Sbjct: 230 PLAGSQVSGVPAASTAHKDLEVPKLLTAHRSLDNNPRREIIQA 272
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.130 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,139,731
Number of Sequences: 28952
Number of extensions: 511807
Number of successful extensions: 1895
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 1819
Number of HSP's gapped (non-prelim): 142
length of query: 454
length of database: 12,070,560
effective HSP length: 83
effective length of query: 371
effective length of database: 9,667,544
effective search space: 3586658824
effective search space used: 3586658824
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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