GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000414-TA|BGIBMGA000414-PA|IPR000637|HMG-I and HMG-Y,
DNA-binding, IPR001965|Zinc finger, PHD-type, IPR011011|Zinc finger,
FYVE/PHD-type, IPR010993|Sterile alpha motif homology
         (454 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    25   1.5  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   4.4  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   7.8  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   7.8  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 193 APLSESQFSLDGSGDEIDQEDSLPHEESGGVCSVCLVQKPRGSNDRLVE--CRDCSNKA 249
           +P+S   +       +I +ED  P   +G     C  +K +G   R  E  C  C ++A
Sbjct: 137 SPMSSGSYDPYSPNGKIGREDLSPSSLNGYSADSCDSKKKKGPTPRQQEELCLVCGDRA 195


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 343 YSGQNSPNVDPFLKPHELDRAPSKLSMDTPIDPSIPDITHWN 384
           Y GQ      P + PH +   P +  +   + P I  + +WN
Sbjct: 401 YGGQMFEAPIPNVSPHYVTPTPPEAPLFQNVLPPIGGMMNWN 442


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 286 AGVLTVCSVCSDAYHALC 303
           A VLT+ ++  + Y+A+C
Sbjct: 156 ASVLTILAISFERYYAIC 173


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 286 AGVLTVCSVCSDAYHALC 303
           A VLT+ ++  + Y+A+C
Sbjct: 156 ASVLTILAISFERYYAIC 173


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.130    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,063
Number of Sequences: 317
Number of extensions: 4916
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 4
length of query: 454
length of database: 114,650
effective HSP length: 59
effective length of query: 395
effective length of database: 95,947
effective search space: 37899065
effective search space used: 37899065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)