Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000414-TA|BGIBMGA000414-PA|IPR000637|HMG-I and HMG-Y,
DNA-binding, IPR001965|Zinc finger, PHD-type, IPR011011|Zinc finger,
FYVE/PHD-type, IPR010993|Sterile alpha motif homology
(454 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 42 2e-04
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 38 0.003
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 38 0.003
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 38 0.004
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 36 0.015
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 36 0.015
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 33 0.062
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 32 0.14
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 31 0.25
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 31 0.33
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 30 0.77
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 1.3
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 29 1.8
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 1.8
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 28 2.3
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 28 3.1
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 28 3.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.1
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 27 4.1
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch... 27 4.1
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 27 4.1
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 27 4.1
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 5.4
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 27 7.2
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 27 7.2
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 27 7.2
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 27 7.2
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 26 9.5
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 26 9.5
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 26 9.5
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 9.5
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 41.5 bits (93), Expect = 2e-04
Identities = 45/237 (18%), Positives = 91/237 (38%), Gaps = 13/237 (5%)
Query: 47 KYSKKQLENIVNKELSSGSLVKLPNGNLALGPADHDVDSS---DSFRFESNADSNTKMTS 103
K ++++ + K +S S +LPN + + +V +S DS +F +A + + +
Sbjct: 18 KKNRRRFQKSQKKSISPSSGSELPNFKTTISQNNEEVKTSLKEDSSKFHPSASAPIFVPT 77
Query: 104 SANSSCRSSPQXXXXXXXXXXXXXXXXHSNNTTRSTAVRVGERRKMAKKVFDPSDNN-VP 162
S+ S + R A G+R K K+ S+ V
Sbjct: 78 SSVQLNVSKNNGHKASDIVDAVSS----KDEELRKHAKGEGKRSKNRKRSSKHSEKQAVD 133
Query: 163 SKRKRGRPVGSLNKSTIKKRLMVAGHIKDDAPLSESQFSLDGSGDEIDQEDSLPHEESGG 222
K S +K ++ + + K P + + ++D + E
Sbjct: 134 LKSSNSSQETSSSKGSVNNKSERSREAKSRMPKNSKEIKKGLDLSKLDMTSRMIVELKNR 193
Query: 223 V--CSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSG-SNILKPRPDNTWQCPHCKT 276
+ CSVC + + C C + H+SC++ N ++ R ++ W+CP+C++
Sbjct: 194 LYECSVCT--DTINPSTSIWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCPYCQS 248
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 37.9 bits (84), Expect = 0.003
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 258 SNILKPRPDNTWQCPHCKTCVICCETNDAGVLTVCSVCSDAYHALCHAPQIPDRLKAWDQ 317
SN L P P+ + P+ C + G C C +++H C P I ++ D
Sbjct: 247 SNELLPTPE---EYPYRYNNDYCSACHGPGNFLCCETCPNSFHFTCIDPPIEEKNLPDDA 303
Query: 318 WECNNC 323
W CN C
Sbjct: 304 WYCNEC 309
Score = 35.9 bits (79), Expect = 0.012
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 13/108 (12%)
Query: 174 LNKSTIKKRLMVAGHIKDDAPLSESQFSLDGSGDEIDQEDSLPHEE------SGGVCSVC 227
+ ++ + + + V + K SE+ ++G ++I + LP E + CS C
Sbjct: 210 VTENNVTRNVTVYSNQKHLGNESENFNDMEGRAEDISSNELLPTPEEYPYRYNNDYCSAC 269
Query: 228 LVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDNTWQCPHCK 275
G + L C C N H +C+ K PD+ W C CK
Sbjct: 270 -----HGPGNFLC-CETCPNSFHFTCIDPPIEE-KNLPDDAWYCNECK 310
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 37.9 bits (84), Expect = 0.003
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 255 QSGSNILKPRPDNTWQCPHCKTCVICCETNDAGVLTVCSVCSDAYHALC-HAPQIPDRLK 313
QS +N +P D + C+ CVIC ++ A VL +C C DAYH C + +P
Sbjct: 106 QSVANAGEPFEDEGSET--CR-CVICGRSDHAEVLLLCDGCDDAYHTYCLNMDAVP---- 158
Query: 314 AWDQWECNNCL 324
+++ C NC+
Sbjct: 159 -IEEFYCPNCV 168
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 37.5 bits (83), Expect = 0.004
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 277 CVIC--CETNDAGVLTVCSVCSDAYHALCHAPQIPDRL--KAWDQWECNNCLESR---PT 329
C +C ++ + C C+ +H LCH P I D L +W C++C+ + P
Sbjct: 235 CSVCQRLQSPPKNRIVFCDGCNTPFHQLCHEPYISDELLDSPNGEWFCDDCIRRKKQAPL 294
Query: 330 VIGSPA 335
V G+ A
Sbjct: 295 VTGTTA 300
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 35.5 bits (78), Expect = 0.015
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 273 HCKTCVICCETNDAGVLTVCSVCSDAYHALC-HAPQIPDRLKAWDQWECNNCLES 326
H C +C + + L C +C YH C AP P W CN+C+ S
Sbjct: 295 HIPKCKLCAQEGSS--LVTCCICQSNYHYACVEAPFAP--FSDIHYWTCNSCIPS 345
Score = 33.9 bits (74), Expect = 0.047
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 226 VCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDNTWQCPHC 274
+CL ++P +D V+C +C H C+ S+I+ + + CP C
Sbjct: 1456 ICLCRQPFAISDGTVQCHNCLEWFHYECVGLSSDIVSTL--SNYACPDC 1502
Score = 30.7 bits (66), Expect = 0.44
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 281 CETNDAGVLTVCSVCSDAYHALCHAPQIPDRLKAWDQWECNNC 323
C +AG++ C +C + YHA C +L+A +++ C C
Sbjct: 1176 CRQPEAGMMIECELCHEWYHAKC-MKMSKKKLRADEKFICPIC 1217
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 35.5 bits (78), Expect = 0.015
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 275 KTCVIC-CETNDAGVLTVCSVCSDAYHALCHAPQIPDRLKAWDQWECNNC 323
K C+ C C ++GV+ C +C + YHA C +L+ +++ C C
Sbjct: 1094 KGCIFCFCRLPESGVMIECEICHEWYHAKC-LKMSKKKLRQDEKFTCPIC 1142
Score = 30.7 bits (66), Expect = 0.44
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 210 DQEDSLPHEESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDNTW 269
D E L + G C C + P ++EC C H CL+ K R D +
Sbjct: 1083 DSEGRLTIRKKKG-CIFCFCRLPESGV--MIECEICHEWYHAKCLKMSKK--KLRQDEKF 1137
Query: 270 QCPHC 274
CP C
Sbjct: 1138 TCPIC 1142
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 33.5 bits (73), Expect = 0.062
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 6/124 (4%)
Query: 35 DDLIKAASDQESKYSKKQLENIVNK---ELSSGSLVKLPNGNLALGPADHDVDSSDSFRF 91
+D ++SD ES+ S + ++ + E S S + N + D DSSDS
Sbjct: 234 NDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESE 293
Query: 92 ESNADSNTKMTSSANSSCRSSPQXXXXXXXXXXXXXXXXHSNNTT---RSTAVRVGERRK 148
S+ DS++ +SS + S SS S N+T ST+V+ + K
Sbjct: 294 SSSEDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSEESTSVKDEDSSK 353
Query: 149 MAKK 152
+ K
Sbjct: 354 IHDK 357
Score = 29.1 bits (62), Expect = 1.3
Identities = 29/141 (20%), Positives = 54/141 (38%), Gaps = 4/141 (2%)
Query: 80 DHDVDSSDSFRFESNADSNTKMTSSANSSCRSSPQXXXXXXXXXXXXXXXXHSNNTTRST 139
D SSDS S+ DS++ +SS + S SS N+++ S+
Sbjct: 127 DSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSS 186
Query: 140 AVRVGERRKMAKKVFDPSDNNVPSKRKRGRPVGSLNKSTIKKRLMVAGHIKDDAPLSESQ 199
+ + + + D S ++ S+ + GS + S+ + +D+ S S
Sbjct: 187 S---DSESESSSEDSDSSSSSSDSESESSSE-GSDSSSSSSSSESESSSEDNDSSSSSSD 242
Query: 200 FSLDGSGDEIDQEDSLPHEES 220
+ S ++ D S ES
Sbjct: 243 SESESSSEDSDSSSSSSDSES 263
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 32.3 bits (70), Expect = 0.14
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 289 LTVCSVCSDAYHALCHAPQIPD-RLKAWD-QWECNNC 323
+ C C+ YH LCH P I D ++ D +W C C
Sbjct: 207 IVFCDGCNSPYHQLCHHPPIDDATVQDVDAEWFCMKC 243
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 31.5 bits (68), Expect = 0.25
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 133 NNTTRSTAVRVGERRKMAKKVFDPSDNNVPSKRKRGRPVGSLN---KSTIKKRLMVAGHI 189
N+T R G ++K FDPS +VP KR S N K+ + R A
Sbjct: 250 NDTKARRITRKGTKKKTV--TFDPSLESVPQKRLNASSNVSSNPAKKTRVSPRRSTAAS- 306
Query: 190 KDDAPLSESQFSLDGSGDEIDQEDSLPHEE 219
K +P S+ S + D+ ++E S+ +EE
Sbjct: 307 KKKSPSSKRASSDEIEKDKEEEEGSVANEE 336
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 31.1 bits (67), Expect = 0.33
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 236 NDRLVECRDCSNKAHISCLQSGSNILKPRPDNTWQCPHCK 275
NDR V +C + H C QS SN + +CP C+
Sbjct: 698 NDRFVHF-ECGHSVHERCQQSTSNSENQMDEEIGECPKCR 736
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 29.9 bits (64), Expect = 0.77
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 9 ERRIITSAIATLIYQDQSYLENGIAFDDLIKAASDQESKYSKKQLENIVNKELSSGSLVK 68
+R + TS A Q YL+ DD + S++SK +++ VN L + +L+K
Sbjct: 26 QRGVATSKYAVHASCLQEYLDKEAWKDDTLIIDLRPVSEFSKSRIKGSVNLSLPA-TLIK 84
Query: 69 LPNGNLALGPAD-HDVDSSDSFR 90
P ++A ++ HDVD F+
Sbjct: 85 RPAFSVARIISNLHDVDDKRDFQ 107
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 274 CKTCVICCETNDAGVLTVCSVCSDAYHALCHAPQIPDRLKAWDQWECNNC 323
C C++C + D V +D H C+A I RLK + C C
Sbjct: 189 CGLCMMCVQRGDERVAITTPYTTDCGHTYCYA-CIMSRLKLVNNVSCPIC 237
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 223 VCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPR---PDNTWQCPHC 274
VC C ++ R S V C CSN H C S + R N + CP C
Sbjct: 214 VCVKCHGREHRSSGKNFVYCDHCSNVYHYDCSPLPSLNKETRNYSQQNGFICPLC 268
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 1.8
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 224 CSVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKP--RPDNTWQCPHCKT-CVIC 280
C VCL ++ S L+ C + H CLQ N P R Q ++ C +C
Sbjct: 208 CVVCL-ERMDSSITGLITIV-CQHTFHCPCLQKWGNSSCPVCRYTQKVQSSEFQSKCTVC 265
Query: 281 CETNDAGVLTVC-SVCSDAYHALCHAPQ 307
C D + +C ++ YH HA Q
Sbjct: 266 CYDKDLWICLICGNIGCGRYHD-AHAKQ 292
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 262 KPRPDNTWQCPHCKTCVICCETNDAGVL-TVCSVCSDAYHALC 303
KP T TCV+C E D+ + + VC +H C
Sbjct: 193 KPFASTTPALIELPTCVVCLERMDSSITGLITIVCQHTFHCPC 235
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 28.3 bits (60), Expect = 2.3
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 48 YSKKQLENIVNKELSSGSLVKLPNGNLALGPADHDVDSSDSFRFESNADSNTKMTSSANS 107
Y K+ N+ +K S+ P L++ AD D ++ FE+ + +NTK S+
Sbjct: 430 YLDKKESNVTSKIKSTAENSSKP---LSMNEADERKDGLNNLLFENKSGANTKEMSNGTE 486
Query: 108 SCRS--SPQ 114
+ + SPQ
Sbjct: 487 TAKENCSPQ 495
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 27.9 bits (59), Expect = 3.1
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Query: 279 ICCETNDAGVLTVCSVCSDAYHALC-HAPQIPDRLKAWDQWECNNCLESRPTVIGSPAII 337
IC + +D + C C D +H C + P+ + L Q+ C C E +
Sbjct: 122 ICQKPDDGSWMLGCDGCEDWFHGTCVNIPESYNDLTV--QYFCPKCTEEGKGITTWKRKC 179
Query: 338 PRSFDYSGQNSPNVDPFLKPHELDRAPSKLSMDTPIDPS 376
R + S PN + H +D K+ + T ++PS
Sbjct: 180 -RLRECSNPTRPNSNYCSDKHGVDFFREKVKLST-VEPS 216
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 225 SVCLVQKPRGSNDRLVECRDCSNKAHISCLQSGSNILKPRPDNTWQCPHC 274
S C V K + D V+C DC H+ C+ + KP W C C
Sbjct: 260 SNCKVCKKWCAFDFSVQCADCKKYYHMDCVVP-PLLKKPPHGFGWTCATC 308
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 4.1
Identities = 34/205 (16%), Positives = 74/205 (36%), Gaps = 10/205 (4%)
Query: 2 SAAIATSERRIITSAIATLIYQDQSYLENGIAFDDLIKAASDQESKYSKKQLENIVNKEL 61
S+ ++S + +S+++T S + + + ++S + S +I++
Sbjct: 220 SSPSSSSSSTLTSSSLSTSSIPSTS--SSSSSTSSSLSSSSSSSTASSSSSSSSIISSSS 277
Query: 62 SSGSLVKLPNGNLALGPADHDVDSSDSFRFESNADSNTKMTS-------SANSSCRSSPQ 114
SS S + ++ + +S S S++ S++ +S S++SS SSP
Sbjct: 278 SSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPT 337
Query: 115 XXXXXXXXXXXXXXXXHSNNTTRSTAVRVGERRKMAKKVFDPSDNNVPSKRKRGRPV-GS 173
++TT S+ ++ S S RP S
Sbjct: 338 SSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSS 397
Query: 174 LNKSTIKKRLMVAGHIKDDAPLSES 198
+ S++ + AP+S +
Sbjct: 398 SHSSSLSSHKSSSSSKSSSAPVSSA 422
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 27.5 bits (58), Expect = 4.1
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 43 DQESKYSKKQLENIVNKELSSGSLVKLPNGNLALGPADHDVDSSDSFRFESNADSNTKMT 102
+Q + K +N + +SS ++V P G A+ P+ + S+ S SN+ S K+T
Sbjct: 334 EQNRENEKSSTKN--DSTVSSSAVVMAPAGP-AMAPSASNKPSASSTTKSSNSKSKKKVT 390
Query: 103 SSANSS 108
S + +S
Sbjct: 391 SISGTS 396
>SPAC18G6.07c |mra1||ribosome biogenesis protein
Mra1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 27.5 bits (58), Expect = 4.1
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 158 DNNVPSKRKRGRPVGSLNKSTIKKRLMVAGHI-KDDAPLSESQFSLDGSGDEIDQEDSLP 216
DN V S ++ P G+ +K T+K R + AG + + ++ GS D Q +
Sbjct: 95 DNVVKSDEEKEDPNGASSK-TVKARPLPAGSVHRVTTHMAPIPARSIGSHDTTTQRLIVV 153
Query: 217 HEESGGVCSVCLVQKPRGSNDRLVECRDCSNKAHISCLQS-GSNILKPRPDNTWQC 271
+++ + V K + + +L+ C D H L+ NI + RPD T QC
Sbjct: 154 LDQA--CLEIYKVGKAKDAKYQLLNCDD-----HQGILKKLNRNIAQARPDITHQC 202
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 327 RPTVIGSPAIIPRSFDYSGQNSPNVDPFLKPHELDRAPSKLSMDTPIDPSI--PDITHWN 384
RPTV+ + +I +GQ+ D L+P +L + P M+ ++ + D+ H N
Sbjct: 191 RPTVLENAKVINEQEGITGQSFERGDAQLQPVKLQQMPMDKEMEKIVEMDLEEEDMMHQN 250
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 190 KDDAPLSESQFSLDGSGDEIDQEDSLPHEESGGVCSVC 227
+D+ +S ++F L+ + E+++ DS H++ C VC
Sbjct: 405 RDNERMSPAEFELETT-QEVEENDSDSHDDEETWCEVC 441
>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 569
Score = 27.1 bits (57), Expect = 5.4
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 54 ENIVNKELSSGSLVKLPNGNLALGPADHDVDSSDSFRFESNADSNTKMTSSANSSCRSS 112
E++ + LS LAL P + DS S +NT T+S++S+ SS
Sbjct: 471 ESLAKRSLSEKPKTAPTGKQLALHPLRRETSILDSTNTTSTNATNTTTTTSSSSTASSS 529
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 26.6 bits (56), Expect = 7.2
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 154 FDPSDNNVPSKRKRGRPVGSLNKSTIKKRLMVAGHIKDDAPLSESQFSLDGSGDEIDQED 213
F + + R RG P ++ K + I DD E + +GS DE D+ED
Sbjct: 195 FSRKMQTISNSRYRGSPKPNIEKQSCSSESDRVSQISDD---EEDE---EGSADEEDEED 248
Query: 214 S 214
S
Sbjct: 249 S 249
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 339 RSFDYSGQNSPNVDPFLKPHELDRAPSKLSMDTPIDPSIPDITHWNTDD 387
R F S Q + +VD F L L + P P+ P I H + D+
Sbjct: 431 RRFAMSEQVAQDVDEFEMTSSLSNDSLHLHHERPTSPANPHIIHGSADE 479
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/41 (24%), Positives = 25/41 (60%)
Query: 28 LENGIAFDDLIKAASDQESKYSKKQLENIVNKELSSGSLVK 68
L+N I+F+DL+ +S++ + K L + ++ + +++K
Sbjct: 302 LKNEISFNDLVNLSSEEMANPDLKNLAEEIRQQSTENTVIK 342
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 277 CVICCETNDAGVLTVCSVCSDAYHALCHAPQIPD 310
CVIC E+ G V C +H C A I D
Sbjct: 321 CVICLESFTKGDKVVALPCKHEFHRPCIAKWIVD 354
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 26.2 bits (55), Expect = 9.5
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 39 KAASDQESKYSKKQLENIVNKELSSGSLVKLPNGNLALGPADHDVDSSDSFRFESN---A 95
+ DQ + S++ +ENI + +S L NG L D+ ++F+ +++ A
Sbjct: 197 RVQQDQLTSASERSIENIADDIPASEPKAILENGEGCLNDNDNISKLKNNFQSQADLMQA 256
Query: 96 DSNTKMTSSANSSCRSS 112
+ N+K+ + S R++
Sbjct: 257 NINSKLDELSQKSTRAA 273
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 63 SGSLVKLPNGNLALGPADHDVDSSDSF--RFESNADSNTKMTSSANSSCRSSPQXXXXXX 120
SG + + NL ++ D+ +++S + E+ D +T S+N++ +SSP
Sbjct: 387 SGQNAENGSTNLPQKTSNSDMPTANSMPVKLENGTDYSTSQEPSSNANNQSSPTSSINGK 446
Query: 121 XXXXXXXXXXHSNNTTRSTAVRVGERRK 148
+S ++R + + K
Sbjct: 447 ASSESANGTSYSKGSSRRNSKNETDEEK 474
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 9.5
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 12 IITSAIATLIYQDQSYLENGIAF 34
++T + +Y D +YL+NG++F
Sbjct: 50 LMTEPLEDSMYSDNNYLDNGVSF 72
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.2 bits (55), Expect = 9.5
Identities = 21/100 (21%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 13 ITSAIATLIYQDQSYLENGIAFDDLIKAASDQESKYSKKQLENIVNKELSSGSLVKLPNG 72
+TS+++T SY+ + + + L +++ ++ S L ++ +++ SL P
Sbjct: 932 LTSSVSTA----SSYIASSASSNTL---STEPKTFSSSSTLSESISS-INTNSLTVKPES 983
Query: 73 NLALGPADHDVDSSDSFRFESNADSNTKMTSSANSSCRSS 112
+L+ SS + + ++SN++ S++++S RSS
Sbjct: 984 SLSSSTTSGLTSSSSTIPSSTRSESNSESASTSSASKRSS 1023
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.130 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,139,411
Number of Sequences: 5004
Number of extensions: 96476
Number of successful extensions: 312
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 50
length of query: 454
length of database: 2,362,478
effective HSP length: 75
effective length of query: 379
effective length of database: 1,987,178
effective search space: 753140462
effective search space used: 753140462
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)
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