GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000414-TA|BGIBMGA000414-PA|IPR000637|HMG-I and HMG-Y,
DNA-binding, IPR001965|Zinc finger, PHD-type, IPR011011|Zinc finger,
FYVE/PHD-type, IPR010993|Sterile alpha motif homology
         (454 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    30   0.035
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    30   0.035
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    30   0.035
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   5.3  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 30.3 bits (65), Expect = 0.035
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 143 VGERRKMAKKVFDPSDNNVPSKRKRGRPVGS 173
           VG +R M   V+ P +N V  KR+ G P G+
Sbjct: 387 VGRKRPMHNVVYRPGENPVTQKREGGPPTGA 417


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 30.3 bits (65), Expect = 0.035
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 143 VGERRKMAKKVFDPSDNNVPSKRKRGRPVGS 173
           VG +R M   V+ P +N V  KR+ G P G+
Sbjct: 407 VGRKRPMHNVVYRPGENPVTQKREGGPPTGA 437


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 30.3 bits (65), Expect = 0.035
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 143 VGERRKMAKKVFDPSDNNVPSKRKRGRPVGS 173
           VG +R M   V+ P +N V  KR+ G P G+
Sbjct: 356 VGRKRPMHNVVYRPGENPVTQKREGGPPTGA 386


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 83  VDSSDSFRFESNADSNTKMTS 103
           +DS  S R E N D NT + S
Sbjct: 362 LDSKVSARIEMNEDDNTSLVS 382


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.130    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,469
Number of Sequences: 429
Number of extensions: 5605
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 4
length of query: 454
length of database: 140,377
effective HSP length: 60
effective length of query: 394
effective length of database: 114,637
effective search space: 45166978
effective search space used: 45166978
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)