Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000413-TA|BGIBMGA000413-PA|undefined
(216 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g37510.1 68417.m05307 ribonuclease III family protein contain... 33 0.15
At4g19130.1 68417.m02823 replication protein-related similar to ... 31 0.60
At3g43930.1 68416.m04702 expressed protein predicted proteins, A... 30 1.0
At2g37990.1 68415.m04663 ribosome biogenesis regulatory protein ... 30 1.0
At1g75330.1 68414.m08750 ornithine carbamoyltransferase, chlorop... 30 1.0
At1g70950.1 68414.m08185 expressed protein 30 1.4
At3g49610.1 68416.m05422 hypothetical protein contains Pfam prof... 29 2.4
At5g63410.1 68418.m07960 leucine-rich repeat transmembrane prote... 29 3.2
At3g61540.1 68416.m06893 peptidase family protein similar to pro... 29 3.2
At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co... 28 4.2
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil... 28 4.2
At5g39380.1 68418.m04771 calmodulin-binding protein-related has ... 28 5.6
At5g50160.1 68418.m06212 ferric reductase-like transmembrane com... 27 7.4
At5g44150.1 68418.m05403 expressed protein 27 7.4
At4g34060.1 68417.m04833 expressed protein similar to DEMETER pr... 27 7.4
At3g05060.1 68416.m00549 SAR DNA-binding protein, putative stron... 27 7.4
At5g55380.1 68418.m06900 membrane bound O-acyl transferase (MBOA... 27 9.7
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai... 27 9.7
At1g09970.2 68414.m01124 leucine-rich repeat transmembrane prote... 27 9.7
At1g09970.1 68414.m01123 leucine-rich repeat transmembrane prote... 27 9.7
>At4g37510.1 68417.m05307 ribonuclease III family protein contains
Pfam profile PF00636 RNase3 domain
Length = 537
Score = 33.1 bits (72), Expect = 0.15
Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 7/135 (5%)
Query: 29 SPRKKRTRIALSVTEKVMIQNVYKHVFEEKAASLLPIEAPEK-KECVSKTADISGIGVTS 87
SP RI S ++ + F K S+L + + C S TA+ G+ S
Sbjct: 7 SPSSSLLRICSSSAPEISFSSSISQ-FPSKTQSILTKSRFQNLRICASVTAETQGLPRDS 65
Query: 88 VYSVLKEHKENEQFKSPEKRGPKHSF--KDKLDDFTFAAIRTLFDG--ASDTFEKLKSIE 143
+LKE + + P+K+ P F + LDD A R L + +F L S
Sbjct: 66 PQRLLKELAQRKTATGPKKKVPPKRFILRPPLDDKKLAE-RFLNSPQLSLKSFPLLSSCL 124
Query: 144 RKEGIYYQDETWINE 158
+ D+TWI+E
Sbjct: 125 PSSKLNNADKTWIDE 139
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 31.1 bits (67), Expect = 0.60
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 79 DISGIGVTSVYSVLKEHKENEQFKSPEKR--GPKHSFKDKLDDFTFA 123
+I GI +Y V EHK+ E+F+ ++ K++FK K+ + TF+
Sbjct: 270 EIMGISAKDLYYVKNEHKDEEKFEDIIRKVAFTKYNFKLKVKEETFS 316
>At3g43930.1 68416.m04702 expressed protein predicted proteins,
Arabidopsis thaliana; expression supported by MPSS
Length = 404
Score = 30.3 bits (65), Expect = 1.0
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 13/112 (11%)
Query: 41 VTEKVMIQNVYKHVFEEKAASLLPIE-----APEKKECVSKTADISGIGVTSVYSVLKEH 95
+TE ++ VYK+ F LLPI+ P + S+T + ++Y+ +E+
Sbjct: 281 LTESERMELVYKNHF---ITLLLPIDWYGEMGPSSRSYFSETGFTCQQILQNIYAFYQEN 337
Query: 96 KENEQFKSPEKRGPKHSFKDKLDDFTFAAIRTLFD-----GASDTFEKLKSI 142
E+ K+ +HS K + D +T+F G+ FE LK +
Sbjct: 338 MSEEELKAAIHTNSRHSEKLRAADSVMKGGKTVFKRIQFLGSEKGFEMLKRV 389
>At2g37990.1 68415.m04663 ribosome biogenesis regulatory protein
(RRS1) family protein contains Pfam profile PF04939:
Ribosome biogenesis regulatory protein (RRS1); similar
to Ribosome biogenesis regulatory protein homolog
(Swiss-Prot:Q15050) [Homo sapiens]
Length = 318
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 59 AASLLPI---EAPEKKECVSKTADISGIGVTSVYSVLKEHKENEQFKSPEKRGPKHSF 113
AA+ LPI +A KK + D++G+ TS S K K+ K P+K+G H +
Sbjct: 189 AATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEKPPKKQGKHHKY 246
>At1g75330.1 68414.m08750 ornithine carbamoyltransferase,
chloroplast / ornithine transcarbamylase / OTCase (OTC)
identical to SP|O50039 Ornithine carbamoyltransferase,
chloroplast precursor (EC 2.1.3.3) (OTCase) (Ornithine
transcarbamylase) {Arabidopsis thaliana}
Length = 375
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 103 SPEKRGPKHSFKDKL--DDFTFAAIRTLFDGASDTFEKLKSIER 144
SP K KD L DDF A I+T+ D AS+ LKS ER
Sbjct: 62 SPSDVKGKSDLKDFLAIDDFDTATIKTILDKASEVKALLKSGER 105
>At1g70950.1 68414.m08185 expressed protein
Length = 478
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 19 SSTKHVKPNLSPRKKRTRIALSVTEKVMIQNVYKHVFEEKAASLLPIEAPEKKECVSKTA 78
S K ++ + R + S+T + + + YKH FEE A ++ + +K+ +K +
Sbjct: 398 SHNKTEPSKVAQSRSRPATSASITNRAVTRVSYKHGFEE--AEMVKVMVSNRKQSAAKDS 455
Query: 79 DI 80
D+
Sbjct: 456 DL 457
>At3g49610.1 68416.m05422 hypothetical protein contains Pfam profile
PF03754: Domain of unknown function (DUF313)
Length = 334
Score = 29.1 bits (62), Expect = 2.4
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 13/136 (9%)
Query: 18 GSSTKHVKPNLS--PRKKRTRIALSVTEKVMIQNVYKHVFEEKAASLLPIEAPEKKECVS 75
GS H+ +L P+K R+ + T +N H ++SL + E+ E S
Sbjct: 86 GSEKSHLDHHLDHLPQKPRSSLECFFTRVYTRRN---HNNVSTSSSLFNTDEFERTETKS 142
Query: 76 KTADISGIGVTSVYSVLKEHKENEQFKSPEKRGPKHSFKDKLDDFTFAAIRTLFDGASDT 135
T S +S S L E+ + ++++S K S K K D F+ A R + D
Sbjct: 143 PTIRNSQ---SSPSSCLMENTKRKRYQSSGK-----SKKPKFDPFSLTAARETPEWLLDV 194
Query: 136 FEKLKSIERKEGIYYQ 151
K+K E + Y+
Sbjct: 195 MRKMKGAEGPIKLIYE 210
>At5g63410.1 68418.m07960 leucine-rich repeat transmembrane protein
kinase, putative contains similarity to receptor-like
protein kinase
Length = 680
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 1 MEIVVFICCYIVPYKRYGSSTKHVKPN 27
M ++V +CC + +R G + KHV N
Sbjct: 325 MSVLVLVCCVFILLRRKGVTKKHVHHN 351
>At3g61540.1 68416.m06893 peptidase family protein similar to prolyl
aminopeptidase (proline iminopeptidase) from Aeromonas
sobria SP|P46547, Propionibacterium freudenreichii
subsp. shermanii GI:2415704, Hafnia alvei GI:1754489
Length = 515
Score = 28.7 bits (61), Expect = 3.2
Identities = 31/119 (26%), Positives = 43/119 (36%), Gaps = 4/119 (3%)
Query: 74 VSKTADISGIGVTSVYSVLKEHKENEQFKSPEKRGPKHSFKDKLDDFTFAAIRTLFDGAS 133
++ A+ + V EH + F PE R H F LD + T+F A
Sbjct: 48 ITSMAEAGSVYVDVAGESKSEHVTGKWFSVPELRLRDHRFIVPLDYSKSSPKITVF--AR 105
Query: 134 DTFEKLKSIERKEGIYYQDETWINEGHAPKKA--WIDQTVSSSRQAFLDGLTTGLKQPL 190
+ K + + Y EG P +A WI + R LD TGL PL
Sbjct: 106 EIVAVGKEEQAMPYLLYLQGGPGFEGPRPSEASGWIQRACEEFRVVLLDQRGTGLSTPL 164
>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
contains Pfam profile PF00856: SET domain
Length = 1423
Score = 28.3 bits (60), Expect = 4.2
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 84 GVTSVYSVLKEHKENEQFKSPEKRGPKHSFKDKLDDFTFAAIRTLFDGASDTFEKLKSIE 143
G SV + + EH ENE F S K L D+T I+ DGA++T + +
Sbjct: 548 GTESVIASISEHVENELFL---------SLKTHLTDYTSILIK---DGANNTTSSARDGK 595
Query: 144 RKEGIYYQDETWINEGHAPKK 164
EG + E + EG + KK
Sbjct: 596 MHEGSF--REQYNLEGSSKKK 614
>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to SP|O14647
Chromodomain-helicase-DNA-binding protein 2 (CHD-2) {Homo
sapiens}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00385: 'chromo' (CHRromatin
Organization MOdifier)
Length = 1722
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 74 VSKTADISGIGVTSVYSVLKEHKENEQFKSPEKRGPKHSFK 114
VS +++SG + +YS LK+ KE E+ P +F+
Sbjct: 1608 VSTFSNLSGDRLNQIYSKLKQEKEEEEGVGPSHLNGSRNFQ 1648
>At5g39380.1 68418.m04771 calmodulin-binding protein-related has
weak similarity to calmodulin-binding proteins
Length = 507
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 87 SVYSVLKEHKENEQFKSPEKRGPKHSFKDKLDDFTFAAIRTLFDGASDTFEKLKSIERKE 146
S + + K K + P + K FK LDD TL G+S +K++ +E+ E
Sbjct: 52 SCHDLCKYGKRQIPVEKPWRSSTKKIFKKSLDD---NLNETLKPGSSKMKKKVREVEKNE 108
Query: 147 G 147
G
Sbjct: 109 G 109
>At5g50160.1 68418.m06212 ferric reductase-like transmembrane
component family protein contains Pfam profile PF01794:
Ferric reductase like transmembrane component
Length = 728
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 82 GIGVTSVYSVLKEHKENEQFKSPEK 106
GIG+T S+LKE + KSP++
Sbjct: 431 GIGITPFLSILKELASKNRLKSPKR 455
>At5g44150.1 68418.m05403 expressed protein
Length = 355
Score = 27.5 bits (58), Expect = 7.4
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 66 EAPEKKECVSKTADISGIGVTSVYSVLKEHKENEQFKSP----EKRGPKHSFKDKLDDFT 121
EA + V+ + S T + S+LK H EQF P +++ F D LDD
Sbjct: 267 EAHTQPNPVASASGKSSAFETELDSLLKSHSSTEQFNKPGNPSDQKIHMTGFNDVLDDLL 326
Query: 122 FAAIRTLFDGASDTFEKL 139
+ ++ ++ T K+
Sbjct: 327 ESTPVSIIPQSNQTSSKV 344
>At4g34060.1 68417.m04833 expressed protein similar to DEMETER
protein [Arabidopsis thaliana] GI:21743571; expression
supported by MPSS
Length = 1073
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 95 HKENEQFKSPEKRGPKHSFKDKLDD 119
HK+ E+ S EK G KHS + L D
Sbjct: 53 HKKKEKKNSKEKHGIKHSESEHLQD 77
>At3g05060.1 68416.m00549 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 533
Score = 27.5 bits (58), Expect = 7.4
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 52 KHVFEEKAASLLPIEAPEKKECVSKTADISGIGVTSVYSVLKE--HKENEQFKSPEKRGP 109
K V EEK P E +KK+ ++T + + K+ H+E E ++P K+
Sbjct: 464 KKVEEEKPEEEEPSEKKKKKKAEAETEAVVEVAKEEKKKNKKKRKHEEEETTETPAKKKD 523
Query: 110 KHSFKDKLDD 119
K K K D
Sbjct: 524 KKEKKKKSKD 533
>At5g55380.1 68418.m06900 membrane bound O-acyl transferase (MBOAT)
family protein / wax synthase-related similar to wax
synthase [gi:5020219] from Simmondsia chinensis
Length = 341
Score = 27.1 bits (57), Expect = 9.7
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 6 FICCYIVPYKRYGSSTKHVKPNLSPRKKRTRIALSVTEKVMIQNVYKHVFE 56
FIC +P K + + PNL P K + L+V K+++ V HV+E
Sbjct: 94 FICFACLPIKIRQDPSPNAIPNLHP-KPMPKWVLAV--KILVLGVLLHVYE 141
>At3g19670.1 68416.m02492 FF domain-containing protein / WW
domain-containing protein weak similarity to
huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
GI:3341980; contains Pfam profiles PF01846: FF domain,
PF00397: WW domain
Length = 960
Score = 27.1 bits (57), Expect = 9.7
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 11 IVPYKRYGSSTKHVKPNLSPRKKRTRIALSVTEKVMIQNVYKHVFEEKAASLLPIEAPEK 70
I+ YKR+ S +KPN RK + R+ + + + +F+E L E +K
Sbjct: 557 IIEYKRFLESCNFIKPNSQWRKVQDRLEVDERCSRLEKIDQLEIFQEYLRDLEREEEEKK 616
Query: 71 K 71
K
Sbjct: 617 K 617
>At1g09970.2 68414.m01124 leucine-rich repeat transmembrane protein
kinase, putative Similar to A. thaliana receptor-like
protein kinase (gb|RLK5_ARATH). ESTs
gb|ATTS0475,gb|ATTS4362 come from this gene isoform
contains a TG acceptor site at intron.
Length = 977
Score = 27.1 bits (57), Expect = 9.7
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 136 FEKLKSIERKEGIYYQDETWINEGHAPKKAWIDQTVSSSRQAFL---DGLTTGLKQPLGK 192
F LK E+KEG + E+W + D + S ++ L G + LG
Sbjct: 628 FLYLKKTEKKEGRSLKHESWSIKSFRKMSFTEDDIIDSIKEENLIGRGGCGDVYRVVLGD 687
Query: 193 GKRLIISHI 201
GK + + HI
Sbjct: 688 GKEVAVKHI 696
>At1g09970.1 68414.m01123 leucine-rich repeat transmembrane protein
kinase, putative Similar to A. thaliana receptor-like
protein kinase (gb|RLK5_ARATH). ESTs
gb|ATTS0475,gb|ATTS4362 come from this gene isoform
contains a TG acceptor site at intron.
Length = 976
Score = 27.1 bits (57), Expect = 9.7
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 136 FEKLKSIERKEGIYYQDETWINEGHAPKKAWIDQTVSSSRQAFL---DGLTTGLKQPLGK 192
F LK E+KEG + E+W + D + S ++ L G + LG
Sbjct: 628 FLYLKKTEKKEGRSLKHESWSIKSFRKMSFTEDDIIDSIKEENLIGRGGCGDVYRVVLGD 687
Query: 193 GKRLIISHI 201
GK + + HI
Sbjct: 688 GKEVAVKHI 696
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.134 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,312,343
Number of Sequences: 28952
Number of extensions: 223422
Number of successful extensions: 612
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 603
Number of HSP's gapped (non-prelim): 23
length of query: 216
length of database: 12,070,560
effective HSP length: 78
effective length of query: 138
effective length of database: 9,812,304
effective search space: 1354097952
effective search space used: 1354097952
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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