Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000413-TA|BGIBMGA000413-PA|undefined
(216 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 38 0.001
SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch... 33 0.024
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb... 29 0.69
SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like factor|Schizosacchar... 27 2.8
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 3.7
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 26 4.9
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 25 6.4
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 25 6.4
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 6.4
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi... 25 6.4
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 25 6.4
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 37.9 bits (84), Expect = 0.001
Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 6/142 (4%)
Query: 63 LPIEAPEKKECVSKTADISGIGVTSVYSVLKEHKENEQFKSPEKRGPKHSFKDKLDDFTF 122
+P +P C + I G+G+ +S ++ H Q+ EK+ K+ +K T
Sbjct: 140 IPGCSPTNLICKAVVHSILGLGIW--HSWIQNHVVQAQYYRTEKQYDKYLENNKF--LTH 195
Query: 123 AAIRTLFDGASDTFEKLKSIERKEGIYYQDETWINEGHAPKKAWIDQTVSSS--RQAFLD 180
L D + EKLK ++ + ++ + + ++ WI++T + + F+
Sbjct: 196 LNNEVLHDNYTRNIEKLKELDNLVAVSFERDDIVEPPYSTGFGWINETTGENIEMEDFVL 255
Query: 181 GLTTGLKQPLGKGKRLIISHIG 202
+ GLK + +GK IS G
Sbjct: 256 YESLGLKDLVNQGKLETISFPG 277
>SPBC19G7.13 |trf1||telomeric DNA binding factor
Trf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 33.5 bits (73), Expect = 0.024
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 2/106 (1%)
Query: 78 ADISGIGVTSVYSVLKEHKENEQFKSPE-KRGPKHSFKDKLDDFTFAAIRTLFDGASDTF 136
+ IS I + + + K +FK+ E + P S D D F + FDG+S+T
Sbjct: 316 SSISAIPIPANSFKRRSKKNGLRFKAGEAESSPSESGSDLTDSLAFGIPSSTFDGSSET- 374
Query: 137 EKLKSIERKEGIYYQDETWINEGHAPKKAWIDQTVSSSRQAFLDGL 182
+ + S+ + + + +N + A +A LDGL
Sbjct: 375 QNVSSVVLYDQVRHMTNNNLNNKRTRRVANRRSWTKEEEEALLDGL 420
>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 28.7 bits (61), Expect = 0.69
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 95 HKENEQFKSPEKRGPKHSFKDKLDDFTFAAIRTLFDGASDTFEKLKSIERKEGI--YYQD 152
HK + + P KRG + + +D D I +D D + + + K+ I Y +
Sbjct: 121 HKVKDCMERPRKRGARWTGEDIQADEVIQDINVSWDAKRDRWNGYDATDYKKVIERYEKL 180
Query: 153 ETWINEGHAPKKAWIDQTVSSSRQAFLDG 181
+ N+G + A + V +SR + + G
Sbjct: 181 DELQNKGEENRDASENSAVKASRNSTVSG 209
>SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like
factor|Schizosaccharomyces pombe|chr 3|||Manual
Length = 203
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 128 LFDGASDTFE-KLKSIERKEGIYYQDETWINEGHAPKKAWIDQTVSSSRQAFLD 180
LF+ +DT L SI R + D+TW E + + + + R AF D
Sbjct: 136 LFESETDTSPGSLMSIIRDQKSLLNDKTWFKEALNERSSSSNPSTPRKRSAFAD 189
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.2 bits (55), Expect = 3.7
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 75 SKTADISG-IGVTSVYSVLKEHKENEQFKSPEKRGPKHSFKDKLDDFTFAAIRTLFDGAS 133
S DI G I V + +L + +N FK PK+ + LD F I T+ D AS
Sbjct: 2132 SMPLDIEGKINVDKLRDLLND--DNYIFKVDNDEFPKND--NILDGFQEKVILTISDFAS 2187
Query: 134 DTFEKL 139
FEKL
Sbjct: 2188 IPFEKL 2193
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 25.8 bits (54), Expect = 4.9
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 22 KHVKPNLSPRKKRTRIALSVTEKVMIQNVYKHVFE--EKAASLLPIEAPEKKECVSKTAD 79
+ +K NL KKR L+ +EK++ ++ V + E+ S L + P++ C TA
Sbjct: 42 QRIKDNLEIVKKRLNRPLTYSEKILYGHLDDPVNQDIERGVSYLKLR-PDRVACQDATAQ 100
Query: 80 IS 81
++
Sbjct: 101 MA 102
>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 503
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 92 LKEHKENEQFKSPEKRGPKHSFKDKLDDFTFAAIRT 127
+KE K+NE K E FK+ L+ + A+++
Sbjct: 337 MKERKQNESVKQGETSFGNSEFKNPLERVAYYALKS 372
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 106 KRGPKHSFKD---KLDDFTFAAIRTLFDGASDTFEKLKSIERK 145
++ +H+F+ +++D + T F+G S T +KL+S+ RK
Sbjct: 74 QKDEEHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRK 116
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 6.4
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 26 PNLSPRKKRTRIALSVTEKVMIQNVYKHVFEEKAASLLPIEAPEKKECVSKTADISGIGV 85
PNL+ K+ R + + + ++ +EK S +E P+ C+ V
Sbjct: 6 PNLN-NKEHNRASEKKNSRTHNKKTNRNQSKEKPVSSRSVETPKNAVCLEPVGTDPVSNV 64
Query: 86 TSVYSVLKEHKENEQ 100
+V + +E E+EQ
Sbjct: 65 ATVDASKEEQDEDEQ 79
>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
Sec14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 6.4
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Query: 42 TEKVMIQNVYKHVFEEKAASLLPIEAPEKK-----ECVSKTADISGIGVT---SVYSVLK 93
T + M+QN+ V+E + +L A +K E D+ G+G+T SVYS ++
Sbjct: 134 TPERMMQNL---VYEYEMLALKRFPACSRKAGGLIETSCTIMDLKGVGITSIHSVYSYIR 190
Query: 94 EHKENEQFKSPEKRG 108
+ Q PE+ G
Sbjct: 191 QASSISQDYYPERMG 205
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 25.4 bits (53), Expect = 6.4
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 92 LKEHKENEQFKSPEKRGPKHSFKDKLDDFTFAAIRTLFDGASDTFEKLKSIERK-----E 146
L ++ EN +F ++R KLD+ +++ LF S+ K ++RK E
Sbjct: 387 LAKNIENNRFILGKRRRKAREALQKLDNLKDLSVQELFIIPSERELKYYELKRKDEKLDE 446
Query: 147 GIYYQDETWINEGHAPKKAWIDQTVSSSRQAFL 179
GI ++ +E P +W+ +RQ FL
Sbjct: 447 GIRALNQALHHESIMP-ASWLKGIKLLARQQFL 478
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.134 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,030,953
Number of Sequences: 5004
Number of extensions: 43733
Number of successful extensions: 142
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 11
length of query: 216
length of database: 2,362,478
effective HSP length: 70
effective length of query: 146
effective length of database: 2,012,198
effective search space: 293780908
effective search space used: 293780908
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)
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