Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000413-TA|BGIBMGA000413-PA|undefined
(216 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0491 + 29470575-29471351,29471574-29471806,29472697-294728... 32 0.41
04_03_0687 + 18713603-18713962,18715318-18715539,18717068-187172... 30 1.3
02_05_0415 + 28787353-28787496,28787658-28788204,28788297-287883... 30 1.3
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535... 29 3.8
03_05_0440 + 24322332-24322388,24323478-24323615,24323654-243237... 29 3.8
02_01_0208 + 1397729-1397753,1397970-1398081,1398171-1398231,139... 29 3.8
12_02_1093 + 26023692-26023865,26023959-26024026,26024155-260241... 28 5.0
02_02_0162 + 7315562-7315846,7316432-7316662,7317002-7317144,731... 28 5.0
05_07_0310 + 29135875-29136052,29136206-29136617,29136723-291368... 28 6.7
07_03_0292 + 16318388-16318756 27 8.8
>02_05_0491 +
29470575-29471351,29471574-29471806,29472697-29472856,
29473149-29473394,29473492-29473628,29473874-29474207,
29474283-29474444,29474717-29474791,29474866-29474966,
29475042-29475111,29475210-29475266,29475357-29475418,
29475505-29475577,29475663-29475884
Length = 902
Score = 31.9 bits (69), Expect = 0.41
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 32 KKRT-RIALSVTEKVMIQN--VYKHVFEEKAASLLPIEAPEKKECVSK-TADISGIGVTS 87
KKRT R+ L V EK+ + K ++ E L EA +KK+ + TA++ +
Sbjct: 620 KKRTFRVPLKVVEKMAGAGSILSKELYSEAKTRL---EALDKKDAERRRTAELKNNLESY 676
Query: 88 VYSVLKEHKENEQFKSPEKRGPKHSFKDKLDD 119
+YS+ ++ +EN + + + SF +KL++
Sbjct: 677 IYSMKEKLEENTEILTVSTEQERESFAEKLNE 708
>04_03_0687 +
18713603-18713962,18715318-18715539,18717068-18717256,
18717419-18717612,18718193-18718328
Length = 366
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 136 FEKLKSIERKEGIYYQD--ETWINEGHAPKKAWIDQTVS-SSRQAFLDGLTTGLKQPLGK 192
F K++ ++ K Y++D ++W G+ P +DQ S+ + L+G TT + P G
Sbjct: 111 FNKVELVDDKTISYWRDRMKSW---GYDPLFLSVDQKSGLSALEETLEGQTTVIVGPSGV 167
Query: 193 GKRLIISHIGGEEGLVED 210
GK +I+ + + + E+
Sbjct: 168 GKSSLINALRSNQNISEE 185
>02_05_0415 +
28787353-28787496,28787658-28788204,28788297-28788392,
28788532-28788645,28788929-28789962,28790053-28790124
Length = 668
Score = 30.3 bits (65), Expect = 1.3
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 8/122 (6%)
Query: 90 SVLKEHKENEQFKSPEKRGPKHSFKDKLDDFTFAAIRTLFDGASDTFEKLKSIERKEGIY 149
S + E E+ E +S LD+FTF T D + E++KS + E +
Sbjct: 552 SSVTEASSEEEVSQQEVEASVNSIVKSLDEFTFTVEGTQKD---ELTEEMKSTDDAEDVG 608
Query: 150 YQDETWINEGHAPKKAWIDQTVSSSRQAFLDGLTTGL--KQPLGKGKRLIISHIGGEEGL 207
++ + + KK + + ++S + L L K G+GKRL ++ + G
Sbjct: 609 AKE---LKKEKKKKKPTVQELNATSMRKLKTMLKEELIAKAAAGEGKRLALAELDDNAGG 665
Query: 208 VE 209
V+
Sbjct: 666 VD 667
>11_08_0007 +
27551173-27551828,27552071-27552282,27553371-27553550,
27555154-27556187
Length = 693
Score = 28.7 bits (61), Expect = 3.8
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 77 TADISGIGVTSVYSVLKEHKENEQFKSPEKRGPKHSFKDKLDDFTFAAIRTLFDGASDTF 136
TA GI V +LKEH+ +Q +S +K G + +K+ D + L +
Sbjct: 351 TAVAGGILAFVVLYILKEHRRRQQNRSFDKNG--GNILNKMMDIKIFSEEELKKMTKNYC 408
Query: 137 EKLKSIERKEGIYYQDETWINEGHAPKKAWIDQTVSSSRQAFLDGLTT 184
EK + + G Y+ T N+ A K+ ++ +Q F D +T+
Sbjct: 409 EKRRIGKGYFGEVYKGITQDNQQVAVKR-FVRNGEEHDKQDFADEITS 455
>03_05_0440 +
24322332-24322388,24323478-24323615,24323654-24323736,
24325038-24325128,24326091-24326189,24326356-24326418,
24327182-24327259,24329354-24329543,24329812-24330065,
24330159-24330531,24331193-24331276,24332085-24332371,
24332495-24332542,24333194-24333220,24333951-24333987,
24334063-24334250,24334343-24334521,24334595-24334877,
24335481-24335717,24335798-24335988,24336552-24336561,
24336844-24336984,24337073-24337288,24338437-24338727,
24338852-24339025
Length = 1272
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 167 IDQTVSSSRQAFLDGLTTGLKQPLGKGKRLIISH 200
+ Q + R +GL T L +PLG G+R+I H
Sbjct: 786 VRQHYAELRSGVREGLPTDLARPLGVGQRVIACH 819
>02_01_0208 +
1397729-1397753,1397970-1398081,1398171-1398231,
1398495-1398788
Length = 163
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 141 SIERKEGIYYQDETW--INEGHAPKKAWIDQTVSSSRQAFLDG---LTTGLKQPLG 191
S+E+ + Y D+TW INE KKA++D + ++A +D + GL P G
Sbjct: 61 SLEKIQKFY--DDTWKLINEDQEKKKAFMDYIRDNVKEAAVDDSLFIMAGLAAPAG 114
>12_02_1093 +
26023692-26023865,26023959-26024026,26024155-26024198,
26024287-26025035,26025506-26025595,26026174-26026235,
26026360-26026465
Length = 430
Score = 28.3 bits (60), Expect = 5.0
Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 3/138 (2%)
Query: 57 EKAASLLPIEAPEKKECVSKTADISGI-GVTSVYSVLKEHKENEQFKSPEKRGPKHSFKD 115
EK A+++ +A +KK+ +S + S +++ EN ++ EK+ K S K
Sbjct: 96 EKTAAVVAEDAGKKKKKKGSDTKVSEAENKVAEPSAVEKPSENADVETKEKKQKKKSKKQ 155
Query: 116 KLDDFTFAAIRTLFDGASDTFEKLKSIERKEGIYYQDETWINEGHAPKKAWIDQTVSSSR 175
+ D+ A + + FE + +++ D + +G KK T +S
Sbjct: 156 ENDEDVEARLEKAESAIINKFETVDTLKEDSKNGLVDVAPVEKGKKKKKG--KSTPETSD 213
Query: 176 QAFLDGLTTGLKQPLGKG 193
+ G GKG
Sbjct: 214 KVDTGSTDAGADCAKGKG 231
>02_02_0162 +
7315562-7315846,7316432-7316662,7317002-7317144,
7317267-7317381,7317940-7318020
Length = 284
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 138 KLKSIERKEGIYYQDETWINEGHAPKKAWIDQTVSSSRQ 176
KL +IE E + ++ W+N+ P I+ ++SSR+
Sbjct: 208 KLTAIEDVETLSRLEDLWLNDNQIPSLDGIESALASSRE 246
>05_07_0310 +
29135875-29136052,29136206-29136617,29136723-29136867,
29137944-29138102,29138183-29138242,29138349-29138546
Length = 383
Score = 27.9 bits (59), Expect = 6.7
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 43 EKVMIQNVYKHVFEEKAASLLPIEAPEKKECVSKTADISGIGVTSVYSVLKEHKENEQFK 102
+K M Y+ V EEK +LL ++A E+K V K ++ + SV K+ E K
Sbjct: 244 DKEMTLEEYEKVLEEKRKALLALKAEERKVEVDK--ELQAMQQLSV----KKANEEVFIK 297
Query: 103 SPEKRGPKHSFKDKLDDFT 121
+ K KD+ D+ T
Sbjct: 298 LGSDKDLKKKEKDEKDERT 316
>07_03_0292 + 16318388-16318756
Length = 122
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 168 DQTVSSSRQAFLDGLTTGLKQPLGKGKRLIISHIGGEEGLVEDSLLIFG 216
D T R D TG +Q G+G+R + + GE G + SLL G
Sbjct: 44 DPTAGEGRPELHDSGGTGRRQHSGQGERRRRAAVCGERGGGQGSLLYAG 92
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.134 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,209,276
Number of Sequences: 37544
Number of extensions: 248376
Number of successful extensions: 544
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 540
Number of HSP's gapped (non-prelim): 10
length of query: 216
length of database: 14,793,348
effective HSP length: 79
effective length of query: 137
effective length of database: 11,827,372
effective search space: 1620349964
effective search space used: 1620349964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)
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