Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000412-TA|BGIBMGA000412-PA|IPR004114|THUMP
(291 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067946-4|AAC17683.1| 345|Caenorhabditis elegans Hypothetical ... 67 2e-11
Z99942-4|CAB17069.1| 541|Caenorhabditis elegans Hypothetical pr... 33 0.24
AF098999-4|AAC68729.1| 659|Caenorhabditis elegans Hypothetical ... 31 1.3
AF016670-2|AAB66100.1| 178|Caenorhabditis elegans Hypothetical ... 31 1.3
AF047661-4|AAC04435.2| 931|Caenorhabditis elegans Hypothetical ... 29 2.9
Z81103-7|CAB03211.3| 579|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z81103-5|CAD56592.2| 550|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z81088-12|CAD56587.2| 579|Caenorhabditis elegans Hypothetical p... 29 3.9
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 29 5.1
Z99171-2|CAB16314.1| 710|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z70686-1|CAA94609.1| 222|Caenorhabditis elegans Hypothetical pr... 28 6.8
AF016687-9|AAK72064.2| 569|Caenorhabditis elegans Hypothetical ... 28 6.8
Z69634-3|CAA93452.4| 591|Caenorhabditis elegans Hypothetical pr... 28 8.9
AF024493-4|AAB70321.1| 190|Caenorhabditis elegans Hypothetical ... 28 8.9
>AF067946-4|AAC17683.1| 345|Caenorhabditis elegans Hypothetical
protein W02G9.3 protein.
Length = 345
Score = 66.9 bits (156), Expect = 2e-11
Identities = 49/244 (20%), Positives = 104/244 (42%), Gaps = 10/244 (4%)
Query: 21 LEPGFKGFFCTCNFREKDCVKEVYNLLNEYASKLYPDLDVEQVPPSAVPXXXXXXXXXXX 80
+E G G F +C EK ++E Y++++E P + P A P
Sbjct: 97 VEAGVTGLFFSCEGHEKQALQEAYSIIDELLED--PANGISLKAPEAAPQGSEAPGNPAE 154
Query: 81 XXXXXXXIGDILRREVDSIKKNSQKSLRFKRFQVVE--TGASNCIFVKTNLPSPEELTTA 138
I D L++ D ++ + K + ++ TG NCIFV + + L
Sbjct: 155 AEDSDEDIADALKKACDDQRQPKPGNFVKKERRCIQRPTGVKNCIFVSVKNANIQLLAEK 214
Query: 139 IIKDLIATRIQKTRHVMRLLPIMITCKANLPDIMESAGKLFDKYFLKEPT----SFSVVF 194
+++ + + + R + R+ P+ T +L + E K+ + T ++SV F
Sbjct: 215 MVE--LTQKAPRCRFLQRVYPVEHTLAVDLSKMNEVLMKVISDTLKADGTGKLPTYSVEF 272
Query: 195 NKRFNNSVSRDLIIKELAELVVVKNRENKADLKNPGLCIIVEVIKGMCLLSIVDNYFTYK 254
R N+SV+++ +++ + + V + L + + V+V + ++ + ++ +
Sbjct: 273 KARNNDSVAKNSVLQMVDDAVCALAPTARVSLNHADVTFFVQVSRTTIMVGVCRQFYDRR 332
Query: 255 KYNL 258
KY+L
Sbjct: 333 KYSL 336
>Z99942-4|CAB17069.1| 541|Caenorhabditis elegans Hypothetical
protein H13N06.4a protein.
Length = 541
Score = 33.1 bits (72), Expect = 0.24
Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 6/147 (4%)
Query: 150 KTRHVMRLLPIMITCKANLPDIMESAGKLFDKYFLKEPTSFSVVFNKRFNNSVSRDLIIK 209
KT+ V+ +L K ++ D+ + F + P + V +K FN L+
Sbjct: 140 KTKEVLEILEGYRIGKLDVKDVPKPVADAFSNDPERHP-ALLVRNSKPFNAETPPSLLTD 198
Query: 210 ELA---ELVVVKNRENKADLKNPGLCIIVEVIKGMCL-LSIVDNYFTYKKYNLNEICKEE 265
EL V+N D+K + VE IKG + LS+ + YK Y + + +
Sbjct: 199 HFYTPNELFFVRNHLPVPDIKTENHRLTVETIKGKTVDLSVEELKKKYKSYTIGSVIQCA 258
Query: 266 SN-DSEESQAKKFKSSLNSETEEQNTQ 291
N ++ +Q KK + + T N +
Sbjct: 259 GNRRADMNQYKKVQGLMWEGTAISNAE 285
>AF098999-4|AAC68729.1| 659|Caenorhabditis elegans Hypothetical
protein W04C9.6 protein.
Length = 659
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 234 IVEVIKGMCLLSIVDNYFTYKKYNLNEICKEESNDSEESQAKKFKSSLN 282
++ + +CL SI+ N TY N +IC ++ N + S+ KS N
Sbjct: 11 LILICATLCLTSILSNMNTY---NFTKICMQDDNSTSTSKVNYTKSESN 56
>AF016670-2|AAB66100.1| 178|Caenorhabditis elegans Hypothetical
protein K02F6.6 protein.
Length = 178
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 100 KKNSQKSLRFKRFQVVETGASNCIFVKTNLPSPEELTTAIIKD 142
+K ++K + +R V++T ASNCIF+ + P +L ++D
Sbjct: 16 RKQTEKCKKSRRTDVLQTDASNCIFIDRS-PKHFDLILNFLRD 57
>AF047661-4|AAC04435.2| 931|Caenorhabditis elegans Hypothetical
protein M70.1 protein.
Length = 931
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 228 NPGLCIIVEVIKGMCLLSIVDNYFTYKKYNLNEICKEESNDSEESQAKKFKSSLNS 283
N L + + KG+ L VD K ++E+ ++ +DS++ + + KSSL S
Sbjct: 673 NDTLVALTAMFKGLSQLPSVDIQADLKILAIDELSQKLKDDSQQQKLDELKSSLQS 728
>Z81103-7|CAB03211.3| 579|Caenorhabditis elegans Hypothetical
protein M04G12.4a protein.
Length = 579
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 263 KEESNDSEESQAKKFKSSLNSET 285
K++ N++EES++ FK+ LNSET
Sbjct: 523 KKKENNTEESESIDFKNILNSET 545
>Z81103-5|CAD56592.2| 550|Caenorhabditis elegans Hypothetical
protein M04G12.4b protein.
Length = 550
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 263 KEESNDSEESQAKKFKSSLNSET 285
K++ N++EES++ FK+ LNSET
Sbjct: 494 KKKENNTEESESIDFKNILNSET 516
>Z81088-12|CAD56587.2| 579|Caenorhabditis elegans Hypothetical
protein M04G12.4a protein.
Length = 579
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 263 KEESNDSEESQAKKFKSSLNSET 285
K++ N++EES++ FK+ LNSET
Sbjct: 523 KKKENNTEESESIDFKNILNSET 545
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 23 PGFKGFFCTCNFREKDCVKEVYNLLNEY 50
PGFKG C+ N E C+ + L+EY
Sbjct: 2022 PGFKGLLCSSNACENFCLHDGNCTLDEY 2049
>Z99171-2|CAB16314.1| 710|Caenorhabditis elegans Hypothetical
protein F47G4.2 protein.
Length = 710
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 134 ELTTAIIKDLIATRIQKTRHVMRLLPIMITCKANLPDI--MESAGKLFDKYFLKE 186
EL + +++ + T H R + + CK LP++ +E +G L D+ L+E
Sbjct: 204 ELFALKLLNVLDLSMHSTHHARRNMQRFLDCKQVLPELRFLECSGNLMDEDMLEE 258
>Z70686-1|CAA94609.1| 222|Caenorhabditis elegans Hypothetical
protein R10H10.1 protein.
Length = 222
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 204 RDLIIKELAELVVVKNRENKADLKNPGLCIIVEVIKGMCLLSIVDNYFTYKKYNLNEIC- 262
R ++ ++ ++ V + LK G C G+ L + ++N T+ + E+
Sbjct: 140 RPMVQEDGGDITYVGFDDGVVKLKMQGSCTGCPS-SGVTLKNGIENMLTFYVPEVKEVIE 198
Query: 263 -KEESNDSEESQAKKFKSS 280
K+ES+D E + KKF+ S
Sbjct: 199 VKDESDDLVEQELKKFEQS 217
>AF016687-9|AAK72064.2| 569|Caenorhabditis elegans Hypothetical
protein T21D12.9b protein.
Length = 569
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 174 SAGKLFDKYFLKEPTSFSVVFNKRFNNSVSRDLIIKELAELV 215
S GK + KYFL FS++++ R + D+++ EL + V
Sbjct: 177 SLGK-YPKYFLPIQWCFSLLYDARAQGKIGADVMLNELIKSV 217
>Z69634-3|CAA93452.4| 591|Caenorhabditis elegans Hypothetical
protein B0001.3 protein.
Length = 591
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 193 VFNKRFNNSVSRDLIIKELAELVVVKNRENKADLKNPGLCIIVEVIKGMCLLSIVDNYFT 252
++N+ F N V D +I +LVV + R K + N G+ +IVE+ C S V+NY +
Sbjct: 108 LYNREFGNFVDMDRLIAVRNKLVVFQFRV-KYNFCN-GIDVIVEL---QCKASPVNNYLS 162
>AF024493-4|AAB70321.1| 190|Caenorhabditis elegans Hypothetical
protein F23F1.2 protein.
Length = 190
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 194 FNKRFNNSVSRDLIIKELAELVVVKNREN 222
F++ FN ++SR+ + + LAE +VK REN
Sbjct: 55 FDEDFNMALSREELERVLAERFLVKPREN 83
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.134 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,341,816
Number of Sequences: 27539
Number of extensions: 242602
Number of successful extensions: 923
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 913
Number of HSP's gapped (non-prelim): 15
length of query: 291
length of database: 12,573,161
effective HSP length: 81
effective length of query: 210
effective length of database: 10,342,502
effective search space: 2171925420
effective search space used: 2171925420
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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