GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000412-TA|BGIBMGA000412-PA|IPR004114|THUMP
         (291 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces pomb...    75   2e-14
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    28   1.8  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    27   3.2  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    27   3.2  
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C...    27   4.2  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    27   4.2  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    26   5.5  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    25   9.6  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    25   9.6  
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    25   9.6  

>SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 54/181 (29%), Positives = 93/181 (51%), Gaps = 11/181 (6%)

Query: 90  DILRREVDSIKKNSQKSLRFKRFQVVETGASNCIFVKTNLPSPEELTTAIIKDLIATRIQ 149
           D + +E++S++K ++K L       +        FVKT  P           ++  T+ +
Sbjct: 86  DAVAKEINSLQKKNKKEL----LTPIMLDMPCVYFVKTRPPIDPVRLVEFTCEVGKTK-K 140

Query: 150 KTRHVMRLLPIMITCKANLPDIMESAGKLFDKYFLKEPTS---FSVVFNKRFNNSVSRDL 206
            TR+  RL+PI+ T   +L D+ E A  L D  F +       F+V  N R +  + +D 
Sbjct: 141 MTRYTQRLIPIVRTTGVSLDDLEELAKSLIDPLFHEGQEGIKEFAVQANIRNHTVLKKDD 200

Query: 207 IIKELAELVVVKNRENKADLKNPGLCIIVEVIKGMCLLSIVDNYFTYKKYNLNEICKEES 266
           I + +A +V    +++  DLKN  L I+V+VIK +  +SIV N+   +++NLNE+ K+  
Sbjct: 201 IYRTVARIV---GKQHMVDLKNFKLLILVQVIKNIIGISIVQNFEELRRFNLNEVYKQPE 257

Query: 267 N 267
           N
Sbjct: 258 N 258


>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 144 IATRIQKTRHVMRLLPIMITCKANLPDIMESAGKLFDKYFLKEPTSFSVVFNKRFNNSVS 203
           + + I+K + ++ +    I+C A +PD   S G LF    L+     +    + F+ SV 
Sbjct: 50  LVSAIRKAKRIVVVTGAGISCDAGIPDFRSSEG-LFSS--LRAEYKLNCSGKELFDGSVY 106

Query: 204 RDL 206
           RDL
Sbjct: 107 RDL 109


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 37  KDCVKEVYNLLNEYASKLYPDLDVEQV 63
           K  V EV +L+N+   +L+PD D +++
Sbjct: 538 KQLVAEVTDLINKLGPELFPDFDPDRI 564


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 204 RDLIIKELAELVVVKNRENKADLKNPGLCIIVEVIKGMCLLSIVDNYFTYKKYNLNEICK 263
           R  I K+ AE    K ++ +AD KNP     +    G      + N F YK   L EI +
Sbjct: 16  RSRIEKKAAES---KRKQKRADKKNPQWKSRIPKDPG------IPNSFPYKDKILAEIEE 66

Query: 264 EESNDSEESQAKKFKSSLNSETEEQN 289
           ++    EE  A++    +++  EE++
Sbjct: 67  QKRIREEEKLARRASGQVDAAMEEED 92


>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 110 KRFQVVETGASNCIFVKTNLPSPEELTTAIIKDLIATRIQKTRHVMRLL 158
           K+FQ+    +SN + +K ++   EE   A +KD+   R     H  R L
Sbjct: 170 KKFQLDSATSSNVLPLKRHMVPYEEFLDAYLKDVNTLRTVIKEHWSRFL 218


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 8/28 (28%), Positives = 18/28 (64%)

Query: 40  VKEVYNLLNEYASKLYPDLDVEQVPPSA 67
           +KE+ N +  +  +L PDL+++ + P +
Sbjct: 525 IKEIVNEIEAWRQQLSPDLEIQNIGPDS 552


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 92  LRREVDSIKKNSQKSLRFKRFQVVETGASNCIFVKTNLP 130
           L+ EV SIKK  +  +  K F  + TG     FV+   P
Sbjct: 645 LKEEVTSIKKGRECGILLKNFDEIVTGDKLQTFVEEYKP 683


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 230 GLCIIVEVIKGMCLLSIVDNYFTYKKYNLNEICKEESNDSEESQAK 275
           GL  I +V KG  +  IV NY + KK +   I +    + +E + K
Sbjct: 271 GLQFIQKVFKGEFMFDIVFNYASSKKISEEMISQAIDKNLQEFEEK 316


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 255 KYNLNEICKEESNDSEESQAKKFKSSLNSETEEQN 289
           K  L  + +E+ NDSE+      KS L +E  ++N
Sbjct: 545 KEELENLVREDENDSEQLDHFDMKSILKAEKFKKN 579


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 166 ANLPDIMESAGKLFDKYFLKEPTSFSVVFNKRFNNSVSRDLIIKELAE 213
           A  P     + + F++   K+  SF     K  NNS+S + + KEL E
Sbjct: 175 ARKPSRSSRSNRGFNRSSKKDDRSFRSSSKKSSNNSISHEDLDKELDE 222


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,192,135
Number of Sequences: 5004
Number of extensions: 46627
Number of successful extensions: 204
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 193
Number of HSP's gapped (non-prelim): 12
length of query: 291
length of database: 2,362,478
effective HSP length: 72
effective length of query: 219
effective length of database: 2,002,190
effective search space: 438479610
effective search space used: 438479610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)