GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000412-TA|BGIBMGA000412-PA|IPR004114|THUMP
         (291 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0123 + 20334350-20334553,20335059-20335490,20336052-203361...    74   1e-13
05_04_0114 + 18090593-18092248                                         28   7.7  
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815...    28   7.7  

>11_06_0123 +
           20334350-20334553,20335059-20335490,20336052-20336191,
           20336281-20336401,20337110-20337250,20337421-20337663
          Length = 426

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 48/156 (30%), Positives = 83/156 (53%), Gaps = 13/156 (8%)

Query: 94  REVDSIKKNSQKSL--RFKR-FQVVETGASNCIFVKTNL----PSPEELTTAIIKDLIAT 146
           + +D +     K L  R KR F  +++G + CIF++ +     P P E+   ++    +T
Sbjct: 194 KPIDDLIDEDLKELGDRKKRLFATLDSGCNGCIFIQMHKRDGDPGPVEIVQNMMSSAAST 253

Query: 147 RIQKTRHVMRLLPIMITCKANLPDIMESAGKLFDKYFLKEPTS---FSVVFNKRFNNSVS 203
           R   +R ++R LP  +TC A+  +I ++   L +KYF KE +S   F+V++  R N  + 
Sbjct: 254 RKHMSRFILRFLPTEVTCYASEEEITKAISPLVEKYFPKESSSVYKFAVLYEARSNTGID 313

Query: 204 RDLIIKELAELVVVKNRENKADLKNPGLCIIVEVIK 239
           R  II  +A+ V    + +K DL +P   IIV++ K
Sbjct: 314 RMKIINAVAKSV---PQPHKVDLSSPDRTIIVQIAK 346



 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 21 LEPGFKGFFCTCN-FREKDCVKEVYNLLNEYASKL 54
          L PG +GFF TC+  RE+   +E  +LL+ +   L
Sbjct: 39 LRPGVQGFFLTCDGGRERQATREALSLLDSFYEDL 73


>05_04_0114 + 18090593-18092248
          Length = 551

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 43  VYNLLNEYASKLYPDLDVEQVPPSAVP 69
           V+N LN YA+ L+  L+    PP+AVP
Sbjct: 377 VWNALNYYAA-LFDALEASSTPPAAVP 402


>01_06_0381 +
           28878811-28879120,28880189-28880331,28880753-28881532,
           28882568-28883968
          Length = 877

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/80 (20%), Positives = 40/80 (50%)

Query: 210 ELAELVVVKNRENKADLKNPGLCIIVEVIKGMCLLSIVDNYFTYKKYNLNEICKEESNDS 269
           ++A+L    ++ N+A   +PG   + E            +   +++   N   +E+ +D 
Sbjct: 650 KMADLSTSADQTNEAGRASPGDLNLSESDPQPSAKEREGSSVPFEREGSNLAKQEKDSDD 709

Query: 270 EESQAKKFKSSLNSETEEQN 289
           E ++A+K++   + E++E+N
Sbjct: 710 ERNRARKYRKKHHPESDEEN 729


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,738,857
Number of Sequences: 37544
Number of extensions: 235287
Number of successful extensions: 629
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 625
Number of HSP's gapped (non-prelim): 4
length of query: 291
length of database: 14,793,348
effective HSP length: 81
effective length of query: 210
effective length of database: 11,752,284
effective search space: 2467979640
effective search space used: 2467979640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)