Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000412-TA|BGIBMGA000412-PA|IPR004114|THUMP
(291 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23952| Best HMM Match : THUMP (HMM E-Value=2.4e-09) 105 6e-23
SB_15382| Best HMM Match : Exo_endo_phos (HMM E-Value=2.2e-06) 37 0.022
SB_12308| Best HMM Match : RVT_1 (HMM E-Value=0) 37 0.022
SB_52166| Best HMM Match : Exo_endo_phos (HMM E-Value=5.6e-10) 37 0.022
SB_2883| Best HMM Match : Exo_endo_phos (HMM E-Value=2.1e-09) 37 0.022
SB_46140| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.068
SB_6377| Best HMM Match : Exo_endo_phos (HMM E-Value=6.5e-10) 35 0.068
SB_23493| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_6188| Best HMM Match : Transposase_23 (HMM E-Value=0.41) 29 3.4
SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_29935| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-06) 28 7.8
>SB_23952| Best HMM Match : THUMP (HMM E-Value=2.4e-09)
Length = 229
Score = 105 bits (251), Expect = 6e-23
Identities = 78/225 (34%), Positives = 108/225 (48%), Gaps = 29/225 (12%)
Query: 21 LEPGFKGFFCTCNFREKDCVKEVYNLLNEYASKLYPDLDVEQVPPSAVPXXXXXXXXXXX 80
L+ G G TCN RE CV E Y++LNE Y D V S
Sbjct: 28 LKAGMCGILVTCNERENACVSEAYSILNE-----YADKLYGPVGHSG-----------KE 71
Query: 81 XXXXXXXIGDILRREVDSIKKNSQKSLRFKRFQVVETGASNCIFVKTNLPS---PEELTT 137
+ + L RE + ++ KRFQ +GA N +F++TNLP P +L
Sbjct: 72 DAEEGEDVEEALAREKQGMNQD-------KRFQSFMSGAKNVVFIRTNLPDNAKPLDLVR 124
Query: 138 AIIKDLIATRIQKTRHVMRLLPIMITCKANLPDIMESAGKLFDKYFLKE---PTSFSVVF 194
+I +DL K+R +R LP+ TC A DI ++A LF+ YFL E P F++ F
Sbjct: 125 SIFEDLQKNGKMKSRLCLRFLPVDATCHAKEEDIKKTALSLFEDYFLVENIKPCKFAITF 184
Query: 195 NKRFNNSVSRDLIIKELAELVVVKNRENKADLKNPGLCIIVEVIK 239
R N+++ RD +IK LA L+ + + DL NP I VEVIK
Sbjct: 185 KARNNSNMQRDDVIKLLAGLIGEAGKGHTVDLGNPDWTICVEVIK 229
>SB_15382| Best HMM Match : Exo_endo_phos (HMM E-Value=2.2e-06)
Length = 493
Score = 36.7 bits (81), Expect = 0.022
Identities = 23/88 (26%), Positives = 40/88 (45%)
Query: 160 IMITCKANLPDIMESAGKLFDKYFLKEPTSFSVVFNKRFNNSVSRDLIIKELAELVVVKN 219
+++T NLPDI +KY +K + V+ N+ F +++ + + + E N
Sbjct: 289 VLVTGDFNLPDISWDCTDCENKYIVKANPQYGVLVNQAFIDTIHEHSLSQGVTEPTRENN 348
Query: 220 RENKADLKNPGLCIIVEVIKGMCLLSIV 247
+ NP L EV+ GM S+V
Sbjct: 349 ILDLVLTTNPDLISRTEVLNGMSNHSVV 376
>SB_12308| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 907
Score = 36.7 bits (81), Expect = 0.022
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 160 IMITCKANLPDIMESAGKLFDKYFLKEPTSFSVVFNKRFNNSVSRDLIIKELAELVVVKN 219
+++T NLPDI +KY +K + V+ N+ F +++ + + + E N
Sbjct: 209 VLVTGDFNLPDISWDCTDCENKYIVKANPQYGVLVNQAFIDTIHEHSLSQGVTEPTRENN 268
Query: 220 RENKADLKNPGLCIIVEVIKGMCLLSIV 247
+ NP L EV+ GM SIV
Sbjct: 269 ILDLVLTTNPDLISRTEVLNGMSDHSIV 296
>SB_52166| Best HMM Match : Exo_endo_phos (HMM E-Value=5.6e-10)
Length = 805
Score = 36.7 bits (81), Expect = 0.022
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 160 IMITCKANLPDIMESAGKLFDKYFLKEPTSFSVVFNKRFNNSVSRDLIIKELAELVVVKN 219
+++T NLPDI +KY +K + V+ N+ F +++ + + + E N
Sbjct: 209 VLVTGDFNLPDISWDCTDCENKYIVKANPQYGVLVNQAFIDTIHEHSLSQGVTEPTRENN 268
Query: 220 RENKADLKNPGLCIIVEVIKGMCLLSIV 247
+ NP L EV+ GM SIV
Sbjct: 269 ILDLVLTTNPDLISRTEVLNGMSDHSIV 296
>SB_2883| Best HMM Match : Exo_endo_phos (HMM E-Value=2.1e-09)
Length = 598
Score = 36.7 bits (81), Expect = 0.022
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 160 IMITCKANLPDIMESAGKLFDKYFLKEPTSFSVVFNKRFNNSVSRDLIIKELAELVVVKN 219
+++T NLPDI +KY +K + V+ N+ F +++ + + + E N
Sbjct: 351 VLVTGDFNLPDISWDCTDCENKYIVKANPQYGVLVNQAFIDTIHEHSLSQGVTEPTRENN 410
Query: 220 RENKADLKNPGLCIIVEVIKGMCLLSIV 247
+ NP L EV+ GM SIV
Sbjct: 411 ILDLVLTTNPDLISRTEVLNGMSDHSIV 438
>SB_46140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 748
Score = 35.1 bits (77), Expect = 0.068
Identities = 23/88 (26%), Positives = 40/88 (45%)
Query: 160 IMITCKANLPDIMESAGKLFDKYFLKEPTSFSVVFNKRFNNSVSRDLIIKELAELVVVKN 219
+++T NLPDI +KY +K + V+ N+ F +++ + + + E N
Sbjct: 438 VLVTGDFNLPDISWDCTDCENKYIVKANPQYGVLVNQTFIDTIHEHSLSQGVTEPTRENN 497
Query: 220 RENKADLKNPGLCIIVEVIKGMCLLSIV 247
+ NP L +V+ GM SIV
Sbjct: 498 ILDLVLTTNPDLISRTKVLNGMSDHSIV 525
>SB_6377| Best HMM Match : Exo_endo_phos (HMM E-Value=6.5e-10)
Length = 450
Score = 35.1 bits (77), Expect = 0.068
Identities = 23/88 (26%), Positives = 40/88 (45%)
Query: 160 IMITCKANLPDIMESAGKLFDKYFLKEPTSFSVVFNKRFNNSVSRDLIIKELAELVVVKN 219
+++T NLPDI +KY +K + V+ N+ F +++ + + + E N
Sbjct: 354 VLVTGDFNLPDISWDCTDCENKYIVKANPQYGVLVNQAFIDTIHEHSLSQGVTEPTRENN 413
Query: 220 RENKADLKNPGLCIIVEVIKGMCLLSIV 247
+ NP L +V+ GM SIV
Sbjct: 414 ILDLVLTTNPDLISRTKVLNGMSDHSIV 441
>SB_23493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1230
Score = 29.5 bits (63), Expect = 3.4
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 160 IMITCKANLPDIMESAGKLFDKYFLKEPTSFSVVFNKRFNNSVSRDLIIKELAELVVVKN 219
+++T NLPDI +KY +K + V+ N+ F +++ L++ V
Sbjct: 589 VLVTGDFNLPDISWDCTDCENKYIVKANPQYGVLVNQAFIDTIHE----HSLSQGVTEPT 644
Query: 220 RENKADLKNPGLCIIVEVIKGMCLLSIV 247
REN + + EV+ GM S+V
Sbjct: 645 REN-------NILDLTEVLNGMSNHSVV 665
>SB_6188| Best HMM Match : Transposase_23 (HMM E-Value=0.41)
Length = 531
Score = 29.5 bits (63), Expect = 3.4
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 168 LPDIMESAGKLFDKYFLKEPTSFSVVFNKRFNNSVSRDLIIKELAELVVVKNRENK-ADL 226
LPDI +KY +K + + N+ F +++ D+ L++ V REN DL
Sbjct: 71 LPDISWDCTDCENKYIVKPNPQYEFLVNQAFIDTI-HDI---SLSQSVTEPTRENNILDL 126
Query: 227 ---KNPGLCIIVEVIKGMCLLSIV 247
NP L EV+ GM SIV
Sbjct: 127 VLTTNPDLISRTEVLNGMSDHSIV 150
>SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1126
Score = 28.7 bits (61), Expect = 5.9
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 256 YNLNEICKEESNDSEESQAKK 276
YN+++IC ++S D E++ KK
Sbjct: 1035 YNIDDICSDDSTDDEDAPRKK 1055
>SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 129 LPSPEELTTAIIKDLIATRIQKTRHVMRLLPIMITCKANLPDI-MESAGKLFDKY 182
LPSP EL+ A+ K+L ++ + R+L I + +L + E A K+ + Y
Sbjct: 520 LPSPRELSAALAKELQEFYVRHENKLKRVLEEKIIVEDDLESLRQEHAKKIEEAY 574
>SB_29935| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-06)
Length = 353
Score = 28.3 bits (60), Expect = 7.8
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 131 SPEELTTAIIKDLIATRIQKTRHVMRLLPIMITCKANLPDIMESAGKL-FDKYFLKEPTS 189
+P E +KD TR+Q+ R M+ ++ S G L F ++ KEP
Sbjct: 180 APTEDADEHLKDEFYTRLQEVLD-SRNQHDMLIITGDMNAKNHSQGNLDFTRWKDKEPDR 238
Query: 190 FSVVFNKRFNNSV 202
V+ NKRF NSV
Sbjct: 239 PYVLVNKRFRNSV 251
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,192,611
Number of Sequences: 59808
Number of extensions: 291252
Number of successful extensions: 797
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 784
Number of HSP's gapped (non-prelim): 14
length of query: 291
length of database: 16,821,457
effective HSP length: 82
effective length of query: 209
effective length of database: 11,917,201
effective search space: 2490695009
effective search space used: 2490695009
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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