GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000412-TA|BGIBMGA000412-PA|IPR004114|THUMP
         (291 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           25   3.3  
AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein p...    24   4.4  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   7.7  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 245  SIVDNYFTYKKYNLNEICKEESNDSEESQAKKFKSSLNSETEE 287
            S  D+  + KK+  N  C   SN+S +       +S +S+T+E
Sbjct: 1377 SKADSLDSPKKHRRNGSCPGPSNESTDGGESMGTASTSSQTDE 1419


>AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein
           protein.
          Length = 400

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 24  GFKGFFCTCNFREKDCVK 41
           G KGF CT   R K C+K
Sbjct: 337 GHKGFECTGQDRSKLCIK 354


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 245 SIVDNYFTYKKYNLNEICKEESNDSEESQAKKFKS--SLNSET 285
           S+V       K  +NE  K + ND     +K+ KS  +L+S+T
Sbjct: 360 SLVSFCLASSKTLVNEANKNDGNDQSVQSSKEIKSVFALHSQT 402


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.134    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,078
Number of Sequences: 2123
Number of extensions: 8653
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 3
length of query: 291
length of database: 516,269
effective HSP length: 63
effective length of query: 228
effective length of database: 382,520
effective search space: 87214560
effective search space used: 87214560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)