GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000412-TA|BGIBMGA000412-PA|IPR004114|THUMP
         (291 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067946-4|AAC17683.1|  345|Caenorhabditis elegans Hypothetical ...    67   2e-11
Z99942-4|CAB17069.1|  541|Caenorhabditis elegans Hypothetical pr...    33   0.24 
AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical ...    31   1.3  
AF016670-2|AAB66100.1|  178|Caenorhabditis elegans Hypothetical ...    31   1.3  
AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z81103-7|CAB03211.3|  579|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z81103-5|CAD56592.2|  550|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z81088-12|CAD56587.2|  579|Caenorhabditis elegans Hypothetical p...    29   3.9  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    29   5.1  
Z99171-2|CAB16314.1|  710|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z70686-1|CAA94609.1|  222|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF016687-9|AAK72064.2|  569|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z69634-3|CAA93452.4|  591|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AF024493-4|AAB70321.1|  190|Caenorhabditis elegans Hypothetical ...    28   8.9  

>AF067946-4|AAC17683.1|  345|Caenorhabditis elegans Hypothetical
           protein W02G9.3 protein.
          Length = 345

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 49/244 (20%), Positives = 104/244 (42%), Gaps = 10/244 (4%)

Query: 21  LEPGFKGFFCTCNFREKDCVKEVYNLLNEYASKLYPDLDVEQVPPSAVPXXXXXXXXXXX 80
           +E G  G F +C   EK  ++E Y++++E      P   +    P A P           
Sbjct: 97  VEAGVTGLFFSCEGHEKQALQEAYSIIDELLED--PANGISLKAPEAAPQGSEAPGNPAE 154

Query: 81  XXXXXXXIGDILRREVDSIKKNSQKSLRFKRFQVVE--TGASNCIFVKTNLPSPEELTTA 138
                  I D L++  D  ++    +   K  + ++  TG  NCIFV     + + L   
Sbjct: 155 AEDSDEDIADALKKACDDQRQPKPGNFVKKERRCIQRPTGVKNCIFVSVKNANIQLLAEK 214

Query: 139 IIKDLIATRIQKTRHVMRLLPIMITCKANLPDIMESAGKLFDKYFLKEPT----SFSVVF 194
           +++  +  +  + R + R+ P+  T   +L  + E   K+       + T    ++SV F
Sbjct: 215 MVE--LTQKAPRCRFLQRVYPVEHTLAVDLSKMNEVLMKVISDTLKADGTGKLPTYSVEF 272

Query: 195 NKRFNNSVSRDLIIKELAELVVVKNRENKADLKNPGLCIIVEVIKGMCLLSIVDNYFTYK 254
             R N+SV+++ +++ + + V       +  L +  +   V+V +   ++ +   ++  +
Sbjct: 273 KARNNDSVAKNSVLQMVDDAVCALAPTARVSLNHADVTFFVQVSRTTIMVGVCRQFYDRR 332

Query: 255 KYNL 258
           KY+L
Sbjct: 333 KYSL 336


>Z99942-4|CAB17069.1|  541|Caenorhabditis elegans Hypothetical
           protein H13N06.4a protein.
          Length = 541

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 6/147 (4%)

Query: 150 KTRHVMRLLPIMITCKANLPDIMESAGKLFDKYFLKEPTSFSVVFNKRFNNSVSRDLIIK 209
           KT+ V+ +L      K ++ D+ +     F     + P +  V  +K FN      L+  
Sbjct: 140 KTKEVLEILEGYRIGKLDVKDVPKPVADAFSNDPERHP-ALLVRNSKPFNAETPPSLLTD 198

Query: 210 ELA---ELVVVKNRENKADLKNPGLCIIVEVIKGMCL-LSIVDNYFTYKKYNLNEICKEE 265
                 EL  V+N     D+K     + VE IKG  + LS+ +    YK Y +  + +  
Sbjct: 199 HFYTPNELFFVRNHLPVPDIKTENHRLTVETIKGKTVDLSVEELKKKYKSYTIGSVIQCA 258

Query: 266 SN-DSEESQAKKFKSSLNSETEEQNTQ 291
            N  ++ +Q KK +  +   T   N +
Sbjct: 259 GNRRADMNQYKKVQGLMWEGTAISNAE 285


>AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical
           protein W04C9.6 protein.
          Length = 659

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 234 IVEVIKGMCLLSIVDNYFTYKKYNLNEICKEESNDSEESQAKKFKSSLN 282
           ++ +   +CL SI+ N  TY   N  +IC ++ N +  S+    KS  N
Sbjct: 11  LILICATLCLTSILSNMNTY---NFTKICMQDDNSTSTSKVNYTKSESN 56


>AF016670-2|AAB66100.1|  178|Caenorhabditis elegans Hypothetical
           protein K02F6.6 protein.
          Length = 178

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 100 KKNSQKSLRFKRFQVVETGASNCIFVKTNLPSPEELTTAIIKD 142
           +K ++K  + +R  V++T ASNCIF+  + P   +L    ++D
Sbjct: 16  RKQTEKCKKSRRTDVLQTDASNCIFIDRS-PKHFDLILNFLRD 57


>AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical
           protein M70.1 protein.
          Length = 931

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/56 (28%), Positives = 29/56 (51%)

Query: 228 NPGLCIIVEVIKGMCLLSIVDNYFTYKKYNLNEICKEESNDSEESQAKKFKSSLNS 283
           N  L  +  + KG+  L  VD     K   ++E+ ++  +DS++ +  + KSSL S
Sbjct: 673 NDTLVALTAMFKGLSQLPSVDIQADLKILAIDELSQKLKDDSQQQKLDELKSSLQS 728


>Z81103-7|CAB03211.3|  579|Caenorhabditis elegans Hypothetical
           protein M04G12.4a protein.
          Length = 579

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/23 (52%), Positives = 19/23 (82%)

Query: 263 KEESNDSEESQAKKFKSSLNSET 285
           K++ N++EES++  FK+ LNSET
Sbjct: 523 KKKENNTEESESIDFKNILNSET 545


>Z81103-5|CAD56592.2|  550|Caenorhabditis elegans Hypothetical
           protein M04G12.4b protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/23 (52%), Positives = 19/23 (82%)

Query: 263 KEESNDSEESQAKKFKSSLNSET 285
           K++ N++EES++  FK+ LNSET
Sbjct: 494 KKKENNTEESESIDFKNILNSET 516


>Z81088-12|CAD56587.2|  579|Caenorhabditis elegans Hypothetical
           protein M04G12.4a protein.
          Length = 579

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/23 (52%), Positives = 19/23 (82%)

Query: 263 KEESNDSEESQAKKFKSSLNSET 285
           K++ N++EES++  FK+ LNSET
Sbjct: 523 KKKENNTEESESIDFKNILNSET 545


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 23   PGFKGFFCTCNFREKDCVKEVYNLLNEY 50
            PGFKG  C+ N  E  C+ +    L+EY
Sbjct: 2022 PGFKGLLCSSNACENFCLHDGNCTLDEY 2049


>Z99171-2|CAB16314.1|  710|Caenorhabditis elegans Hypothetical
           protein F47G4.2 protein.
          Length = 710

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 134 ELTTAIIKDLIATRIQKTRHVMRLLPIMITCKANLPDI--MESAGKLFDKYFLKE 186
           EL    + +++   +  T H  R +   + CK  LP++  +E +G L D+  L+E
Sbjct: 204 ELFALKLLNVLDLSMHSTHHARRNMQRFLDCKQVLPELRFLECSGNLMDEDMLEE 258


>Z70686-1|CAA94609.1|  222|Caenorhabditis elegans Hypothetical
           protein R10H10.1 protein.
          Length = 222

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 204 RDLIIKELAELVVVKNRENKADLKNPGLCIIVEVIKGMCLLSIVDNYFTYKKYNLNEIC- 262
           R ++ ++  ++  V   +    LK  G C       G+ L + ++N  T+    + E+  
Sbjct: 140 RPMVQEDGGDITYVGFDDGVVKLKMQGSCTGCPS-SGVTLKNGIENMLTFYVPEVKEVIE 198

Query: 263 -KEESNDSEESQAKKFKSS 280
            K+ES+D  E + KKF+ S
Sbjct: 199 VKDESDDLVEQELKKFEQS 217


>AF016687-9|AAK72064.2|  569|Caenorhabditis elegans Hypothetical
           protein T21D12.9b protein.
          Length = 569

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 174 SAGKLFDKYFLKEPTSFSVVFNKRFNNSVSRDLIIKELAELV 215
           S GK + KYFL     FS++++ R    +  D+++ EL + V
Sbjct: 177 SLGK-YPKYFLPIQWCFSLLYDARAQGKIGADVMLNELIKSV 217


>Z69634-3|CAA93452.4|  591|Caenorhabditis elegans Hypothetical
           protein B0001.3 protein.
          Length = 591

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 193 VFNKRFNNSVSRDLIIKELAELVVVKNRENKADLKNPGLCIIVEVIKGMCLLSIVDNYFT 252
           ++N+ F N V  D +I    +LVV + R  K +  N G+ +IVE+    C  S V+NY +
Sbjct: 108 LYNREFGNFVDMDRLIAVRNKLVVFQFRV-KYNFCN-GIDVIVEL---QCKASPVNNYLS 162


>AF024493-4|AAB70321.1|  190|Caenorhabditis elegans Hypothetical
           protein F23F1.2 protein.
          Length = 190

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/29 (44%), Positives = 21/29 (72%)

Query: 194 FNKRFNNSVSRDLIIKELAELVVVKNREN 222
           F++ FN ++SR+ + + LAE  +VK REN
Sbjct: 55  FDEDFNMALSREELERVLAERFLVKPREN 83


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.134    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,341,816
Number of Sequences: 27539
Number of extensions: 242602
Number of successful extensions: 923
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 913
Number of HSP's gapped (non-prelim): 15
length of query: 291
length of database: 12,573,161
effective HSP length: 81
effective length of query: 210
effective length of database: 10,342,502
effective search space: 2171925420
effective search space used: 2171925420
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)