GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000412-TA|BGIBMGA000412-PA|IPR004114|THUMP
         (291 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              25   0.79 
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    25   1.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    25   1.0  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    24   1.4  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              22   7.3  

>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 194 FNKRFNNSVSRDLIIKELAELVVVKNRENKADLKNPGLCIIVEVIKGMCLLSIVDNYFTY 253
           FN   +     +++I+E+AE+ + +N  NK   +   +      +K   LL  +  Y T 
Sbjct: 70  FNGYDDGGNFNEVVIREIAEIFLDENGVNKLITECSAISDADLAVKSAKLLKCIGKYKTL 129

Query: 254 KK 255
           K+
Sbjct: 130 KE 131


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 44  YNLLNEYASKLYPDLD-VEQVP-PSAVP 69
           YN  N Y  KLY +++ +EQ+P P  VP
Sbjct: 96  YNNNNNYNKKLYYNINYIEQIPVPVPVP 123


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 44  YNLLNEYASKLYPDLD-VEQVP-PSAVP 69
           YN  N Y  KLY +++ +EQ+P P  VP
Sbjct: 334 YNNNNNYNKKLYYNINYIEQIPVPVPVP 361


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 44  YNLLNEYASKLYPDLD-VEQVP-PSAVP 69
           YN  N Y  KLY +++ +EQ+P P  VP
Sbjct: 96  YNNDNNYNKKLYYNINYIEQIPVPVPVP 123


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query: 194 FNKRFNNSVSRDLIIKELAELVVVKNRENK 223
           FN   +     +++++E+AE+ + +N  NK
Sbjct: 70  FNAYDDGGNFNEVVVREIAEIYLDENEVNK 99


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,597
Number of Sequences: 429
Number of extensions: 3172
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 5
length of query: 291
length of database: 140,377
effective HSP length: 57
effective length of query: 234
effective length of database: 115,924
effective search space: 27126216
effective search space used: 27126216
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)