GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000412-TA|BGIBMGA000412-PA|IPR004114|THUMP
         (291 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12410.1 68418.m01459 THUMP domain-containing protein contain...    92   3e-19
At1g09290.1 68414.m09506 expressed protein This gene is continue...    40   0.003
At4g21530.1 68417.m03111 transducin family protein / WD-40 repea...    30   1.6  
At4g12850.1 68417.m02013 far-red impaired responsive family prot...    29   4.8  
At3g05685.1 68416.m00635 expressed protein                             28   6.4  
At1g47340.1 68414.m05241 F-box family protein contains F-box dom...    28   6.4  
At5g45490.1 68418.m05588 disease resistance protein-related cont...    28   8.5  
At2g02370.1 68415.m00175 expressed protein                             28   8.5  

>At5g12410.1 68418.m01459 THUMP domain-containing protein contains
           Pfam profile PF02926: THUMP domain
          Length = 376

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 52/170 (30%), Positives = 92/170 (54%), Gaps = 12/170 (7%)

Query: 99  IKKNSQKSLRFKRFQVVETGASNCIFVKTNL----PSPEELTTAIIKDLIATRIQKTRHV 154
           +K+   KS R  RF  ++ G +  +F++       PSP+E+    +    AT+   +R +
Sbjct: 208 LKELGDKSKR--RFMKLDPGCNGLVFIQMKKRDGDPSPKEIVQHAMTSAAATKKHMSRFI 265

Query: 155 MRLLPIMITCKANLPDIMESAGKLFDKYF---LKEPTSFSVVFNKRFNNSVSRDLIIKEL 211
           +RLLPI ++C  +  +I  +   L ++YF    + P  F+V++  R N  + R  II  +
Sbjct: 266 LRLLPIEVSCYPSEEEISRAIKPLVEQYFPIETENPRKFAVLYGARANTGLDRMKIINTI 325

Query: 212 AELVVVKNRENKADLKNPGLCIIVEVIKGMCLLSIVDNYFTYKKYNLNEI 261
           A+ +   +   K DL NP + I+VE+IK +CL+ +V+ Y    KYNL ++
Sbjct: 326 AKSIPAPH---KVDLSNPEMTIVVEIIKTVCLIGVVEKYKELAKYNLRQL 372



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 21 LEPGFKGFFCTCN-FREKDCVKEVYNLLNEYASKLYPDLDVEQVP 64
          L+PG +GFF +C+  RE    +E  N+++ +  +L    D +  P
Sbjct: 29 LKPGVQGFFISCDGGREFQAAQEAINVIDSFFEELIQGTDSKVNP 73


>At1g09290.1 68414.m09506 expressed protein This gene is continued
           on the 5' end of BAC T12M14
          Length = 348

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 47/250 (18%), Positives = 99/250 (39%), Gaps = 33/250 (13%)

Query: 21  LEPGFKGFFCTCNF-REKDCVKEVYNLLNEYASKLYPDLDVEQVPPSAVPXXXXXXXXXX 79
           L     GF  TCN  REK   KEV ++L +Y   ++ +        ++            
Sbjct: 56  LHHSHSGFLVTCNIKREKSATKEVMSILGKYIGSMHEEKPEVLNSTASKKQKVCAQETEE 115

Query: 80  XXXXXXXXIGDILRR-----EVDSIK-KNSQKSLRFKRFQVVETGASNCIFVKTNLPSPE 133
                     D L+       V+ +K  N + +      ++ ++G     F   N P+  
Sbjct: 116 GGEKTVPLENDALQETGENPNVEDLKLANEEHNSLMSLVKLTKSGLLLFTFPVENSPNTT 175

Query: 134 ELTTAIIKDLIATRIQKTRHVMRLLPIMITCKANLPDIMESAGKLFDKYF------LKEP 187
            + + + + + +  ++      R+ P+  TC     ++ E+  KL  ++       L +P
Sbjct: 176 NIVSRVFQSMESGALKAPIWCHRIFPVQATCGLTEKELRETVSKLVQRFVNDKDNTLSKP 235

Query: 188 TSFSVVFNKRFNNSVSRDLIIKELAELVV-----------------VKN--RENKADLKN 228
             F+  + +R     ++  I K+ ++++V                 VK+   ++  DLK+
Sbjct: 236 VKFAAGYQRR-GAEETKGKIRKDASDVLVQCPLLDRIKCFETVAAGVKDIVPDSVVDLKS 294

Query: 229 PGLCIIVEVI 238
           P LC++VE++
Sbjct: 295 PELCVLVELL 304


>At4g21530.1 68417.m03111 transducin family protein / WD-40 repeat
           family protein contains 1 WD-40 repeat (PF00400);
           similar to anaphase-promoting complex subunit 4
           GI:6180011 [Homo sapiens]; supported by EST GB:AU237382
          Length = 510

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 209 KELAELVVVKNRENK-ADLKNPGLCIIVEVIKGMCLLSIVDNYFTYKKYNLNEICKEESN 267
           K+L  LVV+   E K  D+K     I V+ + G+  L++  + F  +KY L+++ ++ SN
Sbjct: 207 KDLCRLVVMCTGELKDCDIKPREEKINVQDLPGLHCLAMDTSIFWKRKYELHQVAQQASN 266


>At4g12850.1 68417.m02013 far-red impaired responsive family protein
           / FAR1 family protein weak similarity to far-red
           impaired response protein [Arabidopsis thaliana]
           GI:5764395; contains Pfam profile PF03101: FAR1 family
          Length = 183

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 164 CKANLPDIMESAGKLFDKYFLKEPT-SFSVVFNKRFNNSVSRDLIIKELAELVVVKNR 220
           CKA +   ME +GK     F+KE   S   + +  +++   ++  IKEL E +  ++R
Sbjct: 81  CKATILVKMEKSGKWVVTRFIKEHNHSLQFIGSSSYDSFADKERKIKELTEEIECQDR 138


>At3g05685.1 68416.m00635 expressed protein
          Length = 180

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 255 KYNLNEICKEESNDSEESQAKKFKSSL 281
           +YN +E   E SND +E+Q ++FK  L
Sbjct: 47  EYNSSEYKNEFSNDEDENQWRRFKRQL 73


>At1g47340.1 68414.m05241 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 459

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 102 NSQKSLRFKRFQVVE-TGASNCIFVKTNLPSPEELTTAIIKDLIATRIQKTRHVMRLLPI 160
           NS K  R   F  V+  G++N  F+  ++  P+EL   I+K L A  +++   V +    
Sbjct: 8   NSPKRRRCSSFAAVDLVGSANRTFM-VSVSLPKELILEILKRLPAKSVKRFHCVSKQWAS 66

Query: 161 MITC 164
           M++C
Sbjct: 67  MLSC 70


>At5g45490.1 68418.m05588 disease resistance protein-related
           contains Pfam domain, PF00931: NB-ARC domain, a novel
           signalling motif found in plant resistance gene products
          Length = 354

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/74 (21%), Positives = 40/74 (54%), Gaps = 8/74 (10%)

Query: 215 VVVKNRENKADLKNPGLCIIVEVIKGMCLLSIVDNYFTYKKYNLNEICKEESNDSEESQA 274
           V ++N+E+K  L    +C++ +++KG+ +  ++          ++   K+E  D+EE  +
Sbjct: 120 VSMENKESKEGLDGK-ICVLKKILKGLGVEELILE-------TISTDAKQEFKDNEEVAS 171

Query: 275 KKFKSSLNSETEEQ 288
            +    ++ ETE++
Sbjct: 172 NQEAGEIDRETEKE 185


>At2g02370.1 68415.m00175 expressed protein
          Length = 320

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 233 IIVEVIKGMCLLSIVDNYFTYKKYNLNEICKEESNDSEESQAKKFKSSLNS--ETEEQNT 290
           I+  VI  +  +     +  Y K  L E+   E+N+ EE Q +K +  + +  + EE N 
Sbjct: 257 IVYNVISLVIAVVTTVAFTVYAKRALRELQNAEANEDEEVQVRKVRFEMKNVVQHEEDNH 316

Query: 291 Q 291
           Q
Sbjct: 317 Q 317


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,934,589
Number of Sequences: 28952
Number of extensions: 222640
Number of successful extensions: 768
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 760
Number of HSP's gapped (non-prelim): 12
length of query: 291
length of database: 12,070,560
effective HSP length: 80
effective length of query: 211
effective length of database: 9,754,400
effective search space: 2058178400
effective search space used: 2058178400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)