GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000411-TA|BGIBMGA000411-PA|IPR013818|Lipase, N-terminal,
IPR002197|Helix-turn-helix, Fis-type, IPR000734|Lipase
         (251 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.2  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.9  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    23   2.9  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   2.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 131  IETKMLAFQDAGNPPLYVIVEWKYEAS 157
            I   + A+ D G P LY ++E K + S
Sbjct: 1507 ITLHLSAWSDGGCPMLYFVIEHKKKTS 1533



 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 195  IETKMLAFQDAGNPPLYVIVEWKYEAS 221
            I   + A+ D G P LY ++E K + S
Sbjct: 1507 ITLHLSAWSDGGCPMLYFVIEHKKKTS 1533


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 94  DIIHSNAMPLYFSGFGISEPIGVPGGD 120
           DI ++  MP ++S +   +P G  G +
Sbjct: 28  DIPNAQQMPPHYSNYHYEDPYGYTGSE 54


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 94  DIIHSNAMPLYFSGFGISEPIGVPGGD 120
           DI ++  MP ++S +   +P G  G +
Sbjct: 28  DIPNAQQMPPHYSNYHYEDPYGYTGSE 54


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 94  DIIHSNAMPLYFSGFGISEPIGVPGGD 120
           DI ++  MP ++S +   +P G  G +
Sbjct: 28  DIPNAQQMPPHYSNYHYEDPYGYTGSE 54


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.139    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,713
Number of Sequences: 317
Number of extensions: 2995
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 6
length of query: 251
length of database: 114,650
effective HSP length: 55
effective length of query: 196
effective length of database: 97,215
effective search space: 19054140
effective search space used: 19054140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)