GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000411-TA|BGIBMGA000411-PA|IPR013818|Lipase, N-terminal,
IPR002197|Helix-turn-helix, Fis-type, IPR000734|Lipase
         (251 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    29   0.85 
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   3.4  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    26   4.5  
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p...    25   7.9  

>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 165 RLIKSPSIFIE-YIKLSSIEYNTEKYYKPGEIETKMLAFQDAGNPP 209
           R+ + P   IE Y+    I  NTE  Y+   +    +A Q   +PP
Sbjct: 519 RMCEEPQTLIELYLNYDCISGNTENIYERAIVTLSRIASQSTSDPP 564


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 4   IENLANALLDIDGNESATVIIVDWRGGSQPPYGQSVANIRLVGVMTAHLIH--NIYKFNL 61
           + NLA+ +L  DG  S      DWR  S        +  +L    +   +   + ++FN+
Sbjct: 764 LNNLASTMLK-DGKASDDDDNGDWRPESSESLDSHESEYKLNNTPSEQSVKVSHFFEFNM 822

Query: 62  KLGRIT 67
           KLG +T
Sbjct: 823 KLGEVT 828


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 19  SATVIIVDWRGGSQPPYGQSVANIRLVGVMTAHLIHNIYKFN 60
           S  +   D  G S   Y  S+AN RLV  + + LI+   +FN
Sbjct: 201 SEEIYRTDGNGSSCCAYVASIANRRLVLCLLSSLINTAMRFN 242


>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/45 (26%), Positives = 23/45 (51%)

Query: 138 FQDAGNPPLYVIVEWKYEASLFNPMTWRLIKSPSIFIEYIKLSSI 182
           F+D     + V ++WK E  +FN  T + +   +I +  I  S++
Sbjct: 144 FKDGAFVNVLVAIQWKEEFEIFNNETKKSLPKQTIHVHDISGSAM 188



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/45 (26%), Positives = 23/45 (51%)

Query: 202 FQDAGNPPLYVIVEWKYEASLFNPMTWRLIKSPSIFIEYIKLSSI 246
           F+D     + V ++WK E  +FN  T + +   +I +  I  S++
Sbjct: 144 FKDGAFVNVLVAIQWKEEFEIFNNETKKSLPKQTIHVHDISGSAM 188


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.139    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,253,515
Number of Sequences: 5004
Number of extensions: 54120
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 6
length of query: 251
length of database: 2,362,478
effective HSP length: 71
effective length of query: 180
effective length of database: 2,007,194
effective search space: 361294920
effective search space used: 361294920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)