GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000411-TA|BGIBMGA000411-PA|IPR013818|Lipase, N-terminal,
IPR002197|Helix-turn-helix, Fis-type, IPR000734|Lipase
         (251 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0630 - 4598804-4599295,4599627-4599965,4600002-4600039,460...    29   4.7  
07_03_0835 - 21854000-21854117,21854631-21854866                       28   6.3  
02_05_0863 + 32313890-32314132,32314227-32314517,32315157-323154...    28   8.3  

>06_01_0630 -
           4598804-4599295,4599627-4599965,4600002-4600039,
           4600145-4600460,4600541-4600794,4601586-4601651,
           4603422-4603617
          Length = 566

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 4   IENLANALLDIDGNESATVIIVDWRGGSQPPYGQSVAN 41
           + NL+ A+LD+ G +  + I   W G +  P   ++ N
Sbjct: 412 VHNLSTAILDVTGGDEGSRIEAKWFGTTAAPPSYAIPN 449


>07_03_0835 - 21854000-21854117,21854631-21854866
          Length = 117

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 113 PIGVPGGDCELKYYKPGEIETKMLAFQDAGNPPLYVIVEWKYEASLFNPMTWRLIKSPSI 172
           P G  GG  + KY+ P + E ++   +D G PP   ++   ++ S      +R  KS S+
Sbjct: 27  PAGGGGGGGKDKYWVPADEEEEICRGEDGGRPPAPPLLYRTFKVSGVLLHPYRKDKSKSL 86


>02_05_0863 +
           32313890-32314132,32314227-32314517,32315157-32315493,
           32315944-32316278,32316763-32317010,32317296-32317881,
           32317970-32318083,32318165-32318287,32318325-32318531
          Length = 827

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 5/100 (5%)

Query: 87  RSDAKYVDIIHSNAMPLYFSGFGISEPIGVPGGDCELKYYKPGEIETKMLAFQDAGNPPL 146
           R+ ++ + +I  +A P   S   IS   G    D +L  Y   E+E +    Q+     L
Sbjct: 591 RNHSRGLSLISKSATP---SKLSISHSFGRNEDDLDLLMYSDSELEEQTFVDQEVEKVNL 647

Query: 147 YVIVEWK-YEASLFNPMTWRLIKS-PSIFIEYIKLSSIEY 184
                W+ Y +  F  +  + +K+ P + +E     S+EY
Sbjct: 648 ATDKSWEDYASREFTLVLSKTLKNGPKVMLEAKIAISMEY 687


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.139    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,906,103
Number of Sequences: 37544
Number of extensions: 327964
Number of successful extensions: 528
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 525
Number of HSP's gapped (non-prelim): 4
length of query: 251
length of database: 14,793,348
effective HSP length: 80
effective length of query: 171
effective length of database: 11,789,828
effective search space: 2016060588
effective search space used: 2016060588
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)