GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000411-TA|BGIBMGA000411-PA|IPR013818|Lipase, N-terminal,
IPR002197|Helix-turn-helix, Fis-type, IPR000734|Lipase
         (251 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17580.1 68418.m02062 phototropic-responsive NPH3 family prot...    29   2.3  
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains...    29   2.3  
At2g43990.1 68415.m05470 expressed protein                             29   3.0  
At4g37400.1 68417.m05295 cytochrome P450 family protein similar ...    28   6.9  
At1g66540.1 68414.m07560 cytochrome P450, putative Similar to cy...    28   6.9  

>At5g17580.1 68418.m02062 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 548

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 149 IVEWKYE------ASLFNPMTWRLIKSPSIFIEYIKLSSIEY 184
           +++WK E        L+ P   R IKS SI +EYI LS  +Y
Sbjct: 178 VIDWKSEDLITIPLRLYEPFMIRAIKSRSIPVEYIVLSVCKY 219



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 213 IVEWKYE------ASLFNPMTWRLIKSPSIFIEYIKLSSIEY 248
           +++WK E        L+ P   R IKS SI +EYI LS  +Y
Sbjct: 178 VIDWKSEDLITIPLRLYEPFMIRAIKSRSIPVEYIVLSVCKY 219


>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family ('A'TPases
           'A'ssociated with diverse cellular 'A'ctivities)
          Length = 941

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 148 VIVEWKYEASLFNPMTWRLIKSPSIFIEYIKLSSIEYNTEKYYKPGEIETKML--AFQDA 205
           + ++W   +S+ NP + RL      +I Y K+ ++E + E++ +    +T ++      +
Sbjct: 276 IYIDWNCGSSICNPCSQRLCSESDDYI-YFKVIAMEPSNERFLRVNHSQTALVLGGTVSS 334

Query: 206 GNPP 209
           G PP
Sbjct: 335 GLPP 338


>At2g43990.1 68415.m05470 expressed protein
          Length = 632

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 168 KSPSIFIEYIKLSSIEYNTEKYYKPG-EIETKMLAFQDAGNPPLYVIVEWKYEASLFN 224
           +S S F  Y  LS  +   +K +  G ++E+  + FQ AG  P      W+   S FN
Sbjct: 465 ESNSSFDNYFGLSCSQAEIQKKHDVGSDLESLTMKFQSAGLSPRIQASSWEPSRSSFN 522


>At4g37400.1 68417.m05295 cytochrome P450 family protein similar to
           cytochrome P450 monooxygenase CYP91A2, Arabidopsis
           thaliana, D78607
          Length = 501

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 179 LSSIEYNTEKYYKPGEIETKMLAFQDAGNPPLYVIVEWKYEASLFNP 225
           L S++ N  +YY    I+  ML    AG     V +EW   + L +P
Sbjct: 269 LLSLQQNEPEYYTDVTIKGLMLGMMIAGTDTSAVTLEWAMSSLLNHP 315


>At1g66540.1 68414.m07560 cytochrome P450, putative Similar to
           cytochrome P450 91A1 (SP:Q9FG65)[Arabidopsis thaliana];
           contains Pfam profile: PF00067: Cytochrome P450
          Length = 386

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 179 LSSIEYNTEKYYKPGEIETKMLAFQDAGNPPLYVIVEWKYEASLFNPMTWRLIK 232
           L S++ +  +YY    I+  ML+   AG     V +EW   + L NP   + ++
Sbjct: 161 LLSLQVSQPEYYTDHTIKGTMLSLILAGTDTSAVTLEWALSSLLNNPEVLKKVR 214


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.139    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,391,107
Number of Sequences: 28952
Number of extensions: 272167
Number of successful extensions: 533
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 10
length of query: 251
length of database: 12,070,560
effective HSP length: 79
effective length of query: 172
effective length of database: 9,783,352
effective search space: 1682736544
effective search space used: 1682736544
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)