Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000410-TA|BGIBMGA000410-PA|undefined
(519 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 31 0.29
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz... 31 0.51
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 1.6
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 29 2.1
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 29 2.1
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce... 28 3.6
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 3.6
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po... 28 3.6
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 28 3.6
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 4.8
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 27 4.8
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 27 6.3
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 27 6.3
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 27 8.3
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 31.5 bits (68), Expect = 0.29
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 395 YESAIKPSELTV--TNISKSNVTNNALKEISNVHWMRVDSGFKDENSADSIQFYPGNENS 452
++S +P++LT SK++ ++A + SN+ ++ D N + I+ +P N+
Sbjct: 298 HKSNGRPNKLTAFFNKNSKASSISSAEEHPSNIDDSSIERRHYDSNHSSQIRDHPSTNNN 357
Query: 453 VKKFSNVEETEMKLANKEGT 472
+ N ET + + + T
Sbjct: 358 ASSYQNFNETSDEGEDNDAT 377
>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 322
Score = 30.7 bits (66), Expect = 0.51
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 6 EVTANGSLCRKLFFEEHSDIDHYDSEQTDDEIHAEPRPPSSYEAHT 51
++ + +C + E+ +++DH DS+ DE+ A+ PP E T
Sbjct: 258 DIPSEKIVCYNVIKEKSNEVDHKDSQHVVDEV-AQTSPPEVKEVET 302
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 1.6
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 1/111 (0%)
Query: 359 GRATNDVTKVGDDCSTSFKRVDSGFNENTFYASTSYYESAIKPSELTVTNISKSNVTNNA 418
G +T+ VT TS R + F +T +++S + S + ++ SNVT ++
Sbjct: 627 GTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTATSSTSFASESSSFYSNVTTSS 686
Query: 419 LKEISNVHWMRVDSGFKDEN-SADSIQFYPGNENSVKKFSNVEETEMKLAN 468
+ S F ++ S+ P N VK S TE+K A+
Sbjct: 687 STVSTPPPTTSFPSTFTTSFITSSSLSSIPNNSTEVKTASTSSGTEIKTAS 737
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 28.7 bits (61), Expect = 2.1
Identities = 21/64 (32%), Positives = 27/64 (42%)
Query: 386 NTFYASTSYYESAIKPSELTVTNISKSNVTNNALKEISNVHWMRVDSGFKDENSADSIQF 445
+T Y TSY + S T +S S+VTN+ E + GF D NS F
Sbjct: 354 STPYCHTSYPAMSRLNSSSGYTCVSSSSVTNSGHTENNTWRSDEQSKGFVDINSFSQSLF 413
Query: 446 YPGN 449
GN
Sbjct: 414 SNGN 417
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 373 STSFKRVDSGFNENTFYASTSYYESAIKPSELTVTNISKSNVTN 416
S+S K + T + +TS+ S+ +P+ T IS N+TN
Sbjct: 163 SSSSKSSSRSSSRTTSHRTTSHKSSSYRPTVFPYTTISHYNITN 206
>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 610
Score = 27.9 bits (59), Expect = 3.6
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 231 AHDQSQADSESSSHPDAQA--TWSIVEETNAQQAVRDGCIKLQ 271
+H +S++ S +SHPD QA TW E A + D + L+
Sbjct: 198 SHLKSKSRSRYASHPDLQALNTWMTNEGNQANDEMEDVSLYLE 240
>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 27.9 bits (59), Expect = 3.6
Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 350 FLTENVSQYGRATNDVTKVGDDCSTSFKRVDSGFNE-NTFYASTSYYESAIKPSELTVTN 408
F N+SQ ++N+ + +F + NE +F S++ S ++ +
Sbjct: 22 FCFRNLSQ---SSNNNVSYASSSNRNFVPQNVLNNEYQSFQHSSTSQPSVLRQGKNAFLK 78
Query: 409 ISKSNVTNNALKEISNVHWMRVDSGFKDENSADSIQFYPGNENSVKKFSNVEE 461
S+ + N+ EISN HW R + ++ S+ P + + F+N ++
Sbjct: 79 PSQLSFNMNS-SEISNTHWARDFNILTSNFASSSVTSAPTQSSHISNFTNSQK 130
>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 230
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 138 DEEKNNFTSPESEAMATCLDCISDP 162
DE ++N S E +A A C+D S+P
Sbjct: 68 DELESNLKSSEDQAYALCIDSFSNP 92
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.9 bits (59), Expect = 3.6
Identities = 20/89 (22%), Positives = 41/89 (46%)
Query: 410 SKSNVTNNALKEISNVHWMRVDSGFKDENSADSIQFYPGNENSVKKFSNVEETEMKLANK 469
+ +NV+ + ++E V D ++ +Q + NE+ K+ S V +++ A
Sbjct: 63 ASANVSLSGVEEPVPVESNPSDQDVMSNSTEADLQLHTKNEHLEKRHSFVGKSDFPDAAV 122
Query: 470 EGTADDFDRFLVQSCNKDAMSMSDIFTDD 498
+G + F+ + K +S+ DI DD
Sbjct: 123 QGDNTKNEDFVQSTPKKMDVSLEDISLDD 151
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 133 KVASSDEEKNNFTSPESEAMATCLDCISDPRSEEK 167
K ASS+EE F S E ++ T D +D SEE+
Sbjct: 195 KDASSEEENKEFVSDEGHSIVT-EDASADSESEEE 228
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 27.5 bits (58), Expect = 4.8
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 355 VSQYGRATNDVTKVGDDCSTSFKRVDSGFNEN-TFYASTSYYESAIKPSELTVTNISKSN 413
+SQ GR + ++ + D S V + N N T +++ +KP + + ++
Sbjct: 108 MSQSGRFSANLYEYVDGNSDGISFVLNLENNNDTSVYHMTFHGDRVKPINVF---LGSTD 164
Query: 414 VTNNALKEISNVHWMRVDSGFKDENSADSIQFYPGNEN 451
VT N + + W+ DS +KD D +++P +N
Sbjct: 165 VTPN-FGGVDVIPWLLKDSPYKDAPPLDGTEYFPLLQN 201
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 349 KFLTENVSQYGRATNDVTKVGD 370
+FL+E QYGR D +VGD
Sbjct: 113 RFLSERAKQYGRLGVDYAQVGD 134
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 383 FNENTFYASTSYYESAI-KPSELTVTNISKSNVTNNAL 419
+N + TS + S + KPS V+++S++N NAL
Sbjct: 494 YNSSPVQTRTSLFSSRLSKPSNPIVSSVSQANAPKNAL 531
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 26.6 bits (56), Expect = 8.3
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
Query: 365 VTKVGDDCSTSFKRVDSGFNENTFYASTSYYESAIKPSELTVTNISKSNVTNNALKEISN 424
V DD + S NEN S + ++K S S+++ N+ +IS
Sbjct: 591 VDNANDDTDQAPTTNSSSLNENLLGGHASENDKSLKQSPFQKLTRRLSDLSVNSSGQISK 650
Query: 425 VHWMRVDSGFKDENSADSIQFYPGN-ENSVKKFSNVEE 461
+ +S F + + + I P + +K F++VEE
Sbjct: 651 QDFDNSNSIFSESSLSSPIIEEPKTLIDCLKNFTHVEE 688
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.126 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,966
Number of Sequences: 5004
Number of extensions: 89244
Number of successful extensions: 230
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 224
Number of HSP's gapped (non-prelim): 14
length of query: 519
length of database: 2,362,478
effective HSP length: 76
effective length of query: 443
effective length of database: 1,982,174
effective search space: 878103082
effective search space used: 878103082
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 56 (26.6 bits)
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