Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000410-TA|BGIBMGA000410-PA|undefined
         (519 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    26   0.66 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   3.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   8.1  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 26.2 bits (55), Expect = 0.66
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 375 SFKRVDSG-FNENTFYASTSYYESAIKPSELTVTNISKSNVTNNAL---KEISNVHWMRV 430
           SF R+ S   N N+   S       +K  +  V  ++ S VT+N         N++++  
Sbjct: 220 SFHRLSSHTLNHNSDKMSDQQENLTLKEVDNKVYGMALSPVTHNLYYNSPSSENLYYVNT 279

Query: 431 DSGFKDENSADSIQF 445
           +S  K EN  + +Q+
Sbjct: 280 ESLMKSENQGNDVQY 294


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 220 DFSMDISFEESAHDQS-QADSESSSHPDAQATWSIVEETNAQQ 261
           D+ +D S   S +       SESS +PD + T  ++E++  QQ
Sbjct: 947 DYIVDESSSSSFYSSFLYKSSESSCNPDQKPTEYLLEDSMKQQ 989


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 222 SMDISFEESAHDQSQADSESSSHPDAQATWSIVEETNAQQ 261
           S  ++ ++S     Q     S+HP AQA     ++   QQ
Sbjct: 799 SKSVNGDQSQPPHQQLHHHQSTHPQAQAQAQPQQQQQQQQ 838


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.126    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,204
Number of Sequences: 429
Number of extensions: 5556
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 519
length of database: 140,377
effective HSP length: 61
effective length of query: 458
effective length of database: 114,208
effective search space: 52307264
effective search space used: 52307264
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)