GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000410-TA|BGIBMGA000410-PA|undefined
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    31   0.29 
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    31   0.51 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   1.6  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    29   2.1  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    29   2.1  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    28   3.6  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   3.6  
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    28   3.6  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    28   3.6  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   4.8  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   4.8  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    27   6.3  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    27   6.3  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    27   8.3  

>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 31.5 bits (68), Expect = 0.29
 Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 395 YESAIKPSELTV--TNISKSNVTNNALKEISNVHWMRVDSGFKDENSADSIQFYPGNENS 452
           ++S  +P++LT      SK++  ++A +  SN+    ++    D N +  I+ +P   N+
Sbjct: 298 HKSNGRPNKLTAFFNKNSKASSISSAEEHPSNIDDSSIERRHYDSNHSSQIRDHPSTNNN 357

Query: 453 VKKFSNVEETEMKLANKEGT 472
              + N  ET  +  + + T
Sbjct: 358 ASSYQNFNETSDEGEDNDAT 377


>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 6   EVTANGSLCRKLFFEEHSDIDHYDSEQTDDEIHAEPRPPSSYEAHT 51
           ++ +   +C  +  E+ +++DH DS+   DE+ A+  PP   E  T
Sbjct: 258 DIPSEKIVCYNVIKEKSNEVDHKDSQHVVDEV-AQTSPPEVKEVET 302


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 1/111 (0%)

Query: 359 GRATNDVTKVGDDCSTSFKRVDSGFNENTFYASTSYYESAIKPSELTVTNISKSNVTNNA 418
           G +T+ VT       TS  R  + F  +T  +++S   +    S  + ++   SNVT ++
Sbjct: 627 GTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTATSSTSFASESSSFYSNVTTSS 686

Query: 419 LKEISNVHWMRVDSGFKDEN-SADSIQFYPGNENSVKKFSNVEETEMKLAN 468
               +        S F     ++ S+   P N   VK  S    TE+K A+
Sbjct: 687 STVSTPPPTTSFPSTFTTSFITSSSLSSIPNNSTEVKTASTSSGTEIKTAS 737


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 21/64 (32%), Positives = 27/64 (42%)

Query: 386 NTFYASTSYYESAIKPSELTVTNISKSNVTNNALKEISNVHWMRVDSGFKDENSADSIQF 445
           +T Y  TSY   +   S    T +S S+VTN+   E +         GF D NS     F
Sbjct: 354 STPYCHTSYPAMSRLNSSSGYTCVSSSSVTNSGHTENNTWRSDEQSKGFVDINSFSQSLF 413

Query: 446 YPGN 449
             GN
Sbjct: 414 SNGN 417


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 373 STSFKRVDSGFNENTFYASTSYYESAIKPSELTVTNISKSNVTN 416
           S+S K      +  T + +TS+  S+ +P+    T IS  N+TN
Sbjct: 163 SSSSKSSSRSSSRTTSHRTTSHKSSSYRPTVFPYTTISHYNITN 206


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 231 AHDQSQADSESSSHPDAQA--TWSIVEETNAQQAVRDGCIKLQ 271
           +H +S++ S  +SHPD QA  TW   E   A   + D  + L+
Sbjct: 198 SHLKSKSRSRYASHPDLQALNTWMTNEGNQANDEMEDVSLYLE 240


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 5/113 (4%)

Query: 350 FLTENVSQYGRATNDVTKVGDDCSTSFKRVDSGFNE-NTFYASTSYYESAIKPSELTVTN 408
           F   N+SQ   ++N+        + +F   +   NE  +F  S++   S ++  +     
Sbjct: 22  FCFRNLSQ---SSNNNVSYASSSNRNFVPQNVLNNEYQSFQHSSTSQPSVLRQGKNAFLK 78

Query: 409 ISKSNVTNNALKEISNVHWMRVDSGFKDENSADSIQFYPGNENSVKKFSNVEE 461
            S+ +   N+  EISN HW R  +      ++ S+   P   + +  F+N ++
Sbjct: 79  PSQLSFNMNS-SEISNTHWARDFNILTSNFASSSVTSAPTQSSHISNFTNSQK 130


>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 138 DEEKNNFTSPESEAMATCLDCISDP 162
           DE ++N  S E +A A C+D  S+P
Sbjct: 68  DELESNLKSSEDQAYALCIDSFSNP 92


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 20/89 (22%), Positives = 41/89 (46%)

Query: 410 SKSNVTNNALKEISNVHWMRVDSGFKDENSADSIQFYPGNENSVKKFSNVEETEMKLANK 469
           + +NV+ + ++E   V     D      ++   +Q +  NE+  K+ S V +++   A  
Sbjct: 63  ASANVSLSGVEEPVPVESNPSDQDVMSNSTEADLQLHTKNEHLEKRHSFVGKSDFPDAAV 122

Query: 470 EGTADDFDRFLVQSCNKDAMSMSDIFTDD 498
           +G     + F+  +  K  +S+ DI  DD
Sbjct: 123 QGDNTKNEDFVQSTPKKMDVSLEDISLDD 151


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 133 KVASSDEEKNNFTSPESEAMATCLDCISDPRSEEK 167
           K ASS+EE   F S E  ++ T  D  +D  SEE+
Sbjct: 195 KDASSEEENKEFVSDEGHSIVT-EDASADSESEEE 228


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 5/98 (5%)

Query: 355 VSQYGRATNDVTKVGDDCSTSFKRVDSGFNEN-TFYASTSYYESAIKPSELTVTNISKSN 413
           +SQ GR + ++ +  D  S     V +  N N T     +++   +KP  +    +  ++
Sbjct: 108 MSQSGRFSANLYEYVDGNSDGISFVLNLENNNDTSVYHMTFHGDRVKPINVF---LGSTD 164

Query: 414 VTNNALKEISNVHWMRVDSGFKDENSADSIQFYPGNEN 451
           VT N    +  + W+  DS +KD    D  +++P  +N
Sbjct: 165 VTPN-FGGVDVIPWLLKDSPYKDAPPLDGTEYFPLLQN 201


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 349 KFLTENVSQYGRATNDVTKVGD 370
           +FL+E   QYGR   D  +VGD
Sbjct: 113 RFLSERAKQYGRLGVDYAQVGD 134


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 383 FNENTFYASTSYYESAI-KPSELTVTNISKSNVTNNAL 419
           +N +     TS + S + KPS   V+++S++N   NAL
Sbjct: 494 YNSSPVQTRTSLFSSRLSKPSNPIVSSVSQANAPKNAL 531


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 1/98 (1%)

Query: 365 VTKVGDDCSTSFKRVDSGFNENTFYASTSYYESAIKPSELTVTNISKSNVTNNALKEISN 424
           V    DD   +     S  NEN      S  + ++K S         S+++ N+  +IS 
Sbjct: 591 VDNANDDTDQAPTTNSSSLNENLLGGHASENDKSLKQSPFQKLTRRLSDLSVNSSGQISK 650

Query: 425 VHWMRVDSGFKDENSADSIQFYPGN-ENSVKKFSNVEE 461
             +   +S F + + +  I   P    + +K F++VEE
Sbjct: 651 QDFDNSNSIFSESSLSSPIIEEPKTLIDCLKNFTHVEE 688


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.126    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,966
Number of Sequences: 5004
Number of extensions: 89244
Number of successful extensions: 230
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 224
Number of HSP's gapped (non-prelim): 14
length of query: 519
length of database: 2,362,478
effective HSP length: 76
effective length of query: 443
effective length of database: 1,982,174
effective search space: 878103082
effective search space used: 878103082
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 56 (26.6 bits)