GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000410-TA|BGIBMGA000410-PA|undefined
         (519 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0721 - 23861426-23861929,23862013-23862219,23862598-238628...    29   9.0  
04_03_0137 + 11703765-11703980,11704719-11705471                       29   9.0  

>06_03_0721 -
           23861426-23861929,23862013-23862219,23862598-23862852,
           23862858-23863212,23863533-23863834,23864006-23864281,
           23864854-23865167,23865411-23865683,23865831-23866415,
           23866806-23867132,23867270-23867337,23868670-23868746
          Length = 1180

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 18/74 (24%), Positives = 33/74 (44%)

Query: 389 YASTSYYESAIKPSELTVTNISKSNVTNNALKEISNVHWMRVDSGFKDENSADSIQFYPG 448
           Y   S+ +  +   E  V N        ++LK++SN+ WM V    +     +     P 
Sbjct: 541 YKQPSFGDGDLVYGEPRVENRHHMRSLLSSLKQVSNLPWMVVGDFNEALWQFEHFSLKPR 600

Query: 449 NENSVKKFSNVEET 462
           NE+ ++ F +V +T
Sbjct: 601 NESQMQSFQDVLQT 614


>04_03_0137 + 11703765-11703980,11704719-11705471
          Length = 322

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 31  EQTDDEIHAEPRPP-SSYEAHTPIIFSPDLSRDLV-----TKGMKRTFGTPLK 77
           E+ +  +  EP PP ++ + HT ++FS  L R  V        M  T GTP K
Sbjct: 129 EERELGVEQEPIPPRNAIQLHTSLVFSTSLGRTYVKAVALVPLMSTTLGTPTK 181


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.126    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,005,450
Number of Sequences: 37544
Number of extensions: 476239
Number of successful extensions: 942
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 941
Number of HSP's gapped (non-prelim): 3
length of query: 519
length of database: 14,793,348
effective HSP length: 85
effective length of query: 434
effective length of database: 11,602,108
effective search space: 5035314872
effective search space used: 5035314872
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 62 (29.1 bits)