GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000410-TA|BGIBMGA000410-PA|undefined
         (519 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09215-1|AAA18832.1|  372|Homo sapiens PM-Scl-75 autoantigen pro...    33   3.2  
M58460-1|AAA58384.1|  355|Homo sapiens autoantigen protein.            33   3.2  
AJ517294-1|CAD56889.1|  456|Homo sapiens polymyositis/scleroderm...    33   3.2  
AJ505989-1|CAD44530.1|  439|Homo sapiens polymyositis/scleroderm...    33   3.2  
AC079341-2|AAY40968.1|  355|Homo sapiens unknown protein.              33   3.2  
BC028739-1|AAH28739.1|  500|Homo sapiens potassium channel, subf...    32   5.6  
AF167082-1|AAD48031.2|  500|Homo sapiens neuronal potassium chan...    32   5.6  
AB032013-1|BAA92316.1|  500|Homo sapiens potassium channel Kv8.1...    32   5.6  

>U09215-1|AAA18832.1|  372|Homo sapiens PM-Scl-75 autoantigen
           protein.
          Length = 372

 Score = 32.7 bits (71), Expect = 3.2
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 18  FFEEHSDIDHYDSEQTDDEIHAEPRPPSSYEAHTPIIFSPDLSRDLVTKGMKRTFG 73
           F  E + ID  D E+  +EI AE  PPS     TP++++P  ++  + +G++ ++G
Sbjct: 212 FKMEKAPIDTSDVEEKAEEIIAEAEPPSEV-VSTPVLWTPGTAQ--IGEGVENSWG 264


>M58460-1|AAA58384.1|  355|Homo sapiens autoantigen protein.
          Length = 355

 Score = 32.7 bits (71), Expect = 3.2
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 18  FFEEHSDIDHYDSEQTDDEIHAEPRPPSSYEAHTPIIFSPDLSRDLVTKGMKRTFG 73
           F  E + ID  D E+  +EI AE  PPS     TP++++P  ++  + +G++ ++G
Sbjct: 212 FKMEKAPIDTSDVEEKAEEIIAEAEPPSEV-VSTPVLWTPGTAQ--IGEGVENSWG 264


>AJ517294-1|CAD56889.1|  456|Homo sapiens polymyositis/scleroderma
           autoantigen 1 protein.
          Length = 456

 Score = 32.7 bits (71), Expect = 3.2
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 18  FFEEHSDIDHYDSEQTDDEIHAEPRPPSSYEAHTPIIFSPDLSRDLVTKGMKRTFG 73
           F  E + ID  D E+  +EI AE  PPS     TP++++P  ++  + +G++ ++G
Sbjct: 296 FKMEKAPIDTSDVEEKAEEIIAEAEPPSEV-VSTPVLWTPGTAQ--IGEGVENSWG 348


>AJ505989-1|CAD44530.1|  439|Homo sapiens polymyositis/scleroderma
           autoantigen 1 protein.
          Length = 439

 Score = 32.7 bits (71), Expect = 3.2
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 18  FFEEHSDIDHYDSEQTDDEIHAEPRPPSSYEAHTPIIFSPDLSRDLVTKGMKRTFG 73
           F  E + ID  D E+  +EI AE  PPS     TP++++P  ++  + +G++ ++G
Sbjct: 296 FKMEKAPIDTSDVEEKAEEIIAEAEPPSEV-VSTPVLWTPGTAQ--IGEGVENSWG 348


>AC079341-2|AAY40968.1|  355|Homo sapiens unknown protein.
          Length = 355

 Score = 32.7 bits (71), Expect = 3.2
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 18  FFEEHSDIDHYDSEQTDDEIHAEPRPPSSYEAHTPIIFSPDLSRDLVTKGMKRTFG 73
           F  E + ID  D E+  +EI AE  PPS     TP++++P  ++  + +G++ ++G
Sbjct: 212 FKMEKAPIDTSDVEEKAEEIIAEAEPPSEV-VSTPVLWTPGTAQ--IGEGVENSWG 264


>BC028739-1|AAH28739.1|  500|Homo sapiens potassium channel,
           subfamily V, member 1 protein.
          Length = 500

 Score = 31.9 bits (69), Expect = 5.6
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 217 QKLDFSMDISFEESAHDQSQADSESSSHPDAQATWSIVEETNAQQAVR 264
           + LDF  D   +ES H+  Q  S+       Q  W+I+E+  +  A R
Sbjct: 163 ETLDFKKDTEDQESQHESEQDFSQGPCPTVRQKLWNILEKPGSSTAAR 210


>AF167082-1|AAD48031.2|  500|Homo sapiens neuronal potassium channel
           alpha subunit protein.
          Length = 500

 Score = 31.9 bits (69), Expect = 5.6
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 217 QKLDFSMDISFEESAHDQSQADSESSSHPDAQATWSIVEETNAQQAVR 264
           + LDF  D   +ES H+  Q  S+       Q  W+I+E+  +  A R
Sbjct: 163 ETLDFKKDTEDQESQHESEQDFSQGPCPTVRQKLWNILEKPGSSTAAR 210


>AB032013-1|BAA92316.1|  500|Homo sapiens potassium channel Kv8.1
           protein.
          Length = 500

 Score = 31.9 bits (69), Expect = 5.6
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 217 QKLDFSMDISFEESAHDQSQADSESSSHPDAQATWSIVEETNAQQAVR 264
           + LDF  D   +ES H+  Q  S+       Q  W+I+E+  +  A R
Sbjct: 163 ETLDFKKDTEDQESQHESEQDFSQGPCPTVRQKLWNILEKPGSSTAAR 210


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.312    0.126    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,356,351
Number of Sequences: 224733
Number of extensions: 2348648
Number of successful extensions: 7102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7099
Number of HSP's gapped (non-prelim): 8
length of query: 519
length of database: 73,234,838
effective HSP length: 93
effective length of query: 426
effective length of database: 52,334,669
effective search space: 22294568994
effective search space used: 22294568994
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 67 (31.1 bits)