GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000410-TA|BGIBMGA000410-PA|undefined
         (519 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69884-4|CAA93751.2|  913|Caenorhabditis elegans Hypothetical pr...    33   0.49 
AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical ...    31   1.5  
Z81073-7|CAB03032.2|  248|Caenorhabditis elegans Hypothetical pr...    30   3.4  
AL132876-32|CAF31497.1|  840|Caenorhabditis elegans Hypothetical...    30   3.4  
AL132876-30|CAD21658.1|  906|Caenorhabditis elegans Hypothetical...    30   3.4  
AF026214-1|AAB71313.1|  140|Caenorhabditis elegans Hypothetical ...    29   6.0  
AF003139-10|AAB54160.3|  294|Caenorhabditis elegans Hypothetical...    29   6.0  
Z67990-5|CAA91936.2|  638|Caenorhabditis elegans Hypothetical pr...    29   7.9  
AB012617-1|BAA33488.1|  638|Caenorhabditis elegans FLR-1 protein.      29   7.9  

>Z69884-4|CAA93751.2|  913|Caenorhabditis elegans Hypothetical
           protein F31F6.5 protein.
          Length = 913

 Score = 33.1 bits (72), Expect = 0.49
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 423 SNVHWMRVDSGFKDENSADSIQFYPGNENSVKKFSNVEETEMKLANKEGTADDFDRFL-- 480
           S+  W R  S F +    D  +F PG     K+F N+      +  K+G +   D  L  
Sbjct: 61  SDARWRREISVFNENWPLDENKFLPGKSFEAKRFVNI-----LIRAKDGGSIMRDNVLHE 115

Query: 481 VQSCNKDAMSMSDIFTDDMTFNCNF 505
           ++  N+  M+   I TDD+ FN  +
Sbjct: 116 IEILNQWIMNNISIPTDDLKFNLTY 140


>AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical
           protein F14F9.3 protein.
          Length = 848

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 17/58 (29%), Positives = 30/58 (51%)

Query: 24  DIDHYDSEQTDDEIHAEPRPPSSYEAHTPIIFSPDLSRDLVTKGMKRTFGTPLKKSSS 81
           + ++YD E  D++     +     EAH+P   S DLS   V K  K++  + + +SS+
Sbjct: 195 EFENYDEECEDEDETELEKSSDELEAHSPTTSSLDLSLCFVEKRNKKSRKSKISESSA 252


>Z81073-7|CAB03032.2|  248|Caenorhabditis elegans Hypothetical
           protein F30F8.5 protein.
          Length = 248

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 364 DVTKVGDDCSTSFKRVDSGFNENTFYASTSYY-----ESAIKPSELTVTNISKSNVTNNA 418
           DV  +  DCST  K+  +  NE     STS       ++   P +   T+ S S+ T N 
Sbjct: 29  DVEVIKSDCSTPEKQNGAVGNEQQMNNSTSTRRTDSNKNLSPPPQRLRTSSSTSDGTENL 88

Query: 419 LKEISNVHWMRVD 431
           +  +S+  W+ +D
Sbjct: 89  ISSLSSWDWVTID 101


>AL132876-32|CAF31497.1|  840|Caenorhabditis elegans Hypothetical
           protein Y105E8A.7b protein.
          Length = 840

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 364 DVTKVGDDCSTSFKRVDSGFNENTFYASTSYYESAIKPSELTVTNISKSNVTNNALKEIS 423
           ++T  G  C  +  RVD G           ++E+ + PS     +   +    N LK   
Sbjct: 683 EMTSNGASCQKAVIRVDGGPRSEYCGTKREFFEAYLSPSNSVRISFLTAPDKVNGLKGF- 741

Query: 424 NVHWMRVDS-GFKDENSADSIQFY 446
           N+ W  V +   KDEN   S   Y
Sbjct: 742 NLSWTEVKNLSGKDENVCKSDSLY 765


>AL132876-30|CAD21658.1|  906|Caenorhabditis elegans Hypothetical
           protein Y105E8A.7a protein.
          Length = 906

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 364 DVTKVGDDCSTSFKRVDSGFNENTFYASTSYYESAIKPSELTVTNISKSNVTNNALKEIS 423
           ++T  G  C  +  RVD G           ++E+ + PS     +   +    N LK   
Sbjct: 683 EMTSNGASCQKAVIRVDGGPRSEYCGTKREFFEAYLSPSNSVRISFLTAPDKVNGLKGF- 741

Query: 424 NVHWMRVDS-GFKDENSADSIQFY 446
           N+ W  V +   KDEN   S   Y
Sbjct: 742 NLSWTEVKNLSGKDENVCKSDSLY 765


>AF026214-1|AAB71313.1|  140|Caenorhabditis elegans Hypothetical
           protein F52H2.3 protein.
          Length = 140

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 420 KEISNVHWMRVDSGFKDENSADSIQFYPGNENSVKKFSNVEETEMKLANKEGTA 473
           K +S+    ++ S  +DEN+ + +  YPGN  ++K+  N+    +K    E  A
Sbjct: 46  KLLSSSENAKLRSEKQDENNEERLFKYPGNLRAIKRKRNISNESIKNVGVESGA 99


>AF003139-10|AAB54160.3|  294|Caenorhabditis elegans Hypothetical
           protein F53G12.4 protein.
          Length = 294

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 13/49 (26%), Positives = 29/49 (59%)

Query: 435 KDENSADSIQFYPGNENSVKKFSNVEETEMKLANKEGTADDFDRFLVQS 483
           K E S + ++    +  + +K  N+  +++K+  ++GT DDF+R  ++S
Sbjct: 19  KTEMSGNYMESAEKHVENGEKIDNLLRSQLKIDIRDGTGDDFERKSIKS 67


>Z67990-5|CAA91936.2|  638|Caenorhabditis elegans Hypothetical
           protein F02D10.5 protein.
          Length = 638

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 6/101 (5%)

Query: 403 ELTVTNISKSNVTNNALKEISNVHWMRVDSGFKDENSADSIQFYPGNENSVKKFSNVEET 462
           E+T+ N++  N T      IS   W  +   F +  +++      G E  ++  +N +E 
Sbjct: 90  EVTICNLNPLNTTKLEELNISKSTWTYIFGYFDEITTSEHKSTKLGEEQFLEIMNNYQE- 148

Query: 463 EMKLANKEGTADDFDRFLVQSCNKDAMSMSDIFTDDMTFNC 503
              L  +E    +F + + +SC +  +S S  F  +   NC
Sbjct: 149 ---LTKQEFNVKNFLKSVSKSCEETFISCS--FGREKLHNC 184


>AB012617-1|BAA33488.1|  638|Caenorhabditis elegans FLR-1 protein.
          Length = 638

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 6/101 (5%)

Query: 403 ELTVTNISKSNVTNNALKEISNVHWMRVDSGFKDENSADSIQFYPGNENSVKKFSNVEET 462
           E+T+ N++  N T      IS   W  +   F +  +++      G E  ++  +N +E 
Sbjct: 90  EVTICNLNPLNTTKLEELNISKSTWTYIFGYFDEITTSEHKSTKLGEEQFLEIMNNYQE- 148

Query: 463 EMKLANKEGTADDFDRFLVQSCNKDAMSMSDIFTDDMTFNC 503
              L  +E    +F + + +SC +  +S S  F  +   NC
Sbjct: 149 ---LTKQEFNVKNFLKSVSKSCEETFISCS--FGREKLHNC 184


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.312    0.126    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,982,170
Number of Sequences: 27539
Number of extensions: 477822
Number of successful extensions: 1083
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1079
Number of HSP's gapped (non-prelim): 9
length of query: 519
length of database: 12,573,161
effective HSP length: 85
effective length of query: 434
effective length of database: 10,232,346
effective search space: 4440838164
effective search space used: 4440838164
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 62 (29.1 bits)