GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000410-TA|BGIBMGA000410-PA|undefined
         (519 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61910.3 68418.m07772 expressed protein                             30   3.2  
At5g61910.2 68418.m07771 expressed protein                             30   3.2  
At5g61910.1 68418.m07770 expressed protein                             30   3.2  
At3g54620.1 68416.m06043 bZIP transcription factor family protei...    30   3.2  
At4g16150.1 68417.m02450 calmodulin-binding protein similar to a...    30   4.3  
At4g12610.1 68417.m01987 transcription initiation factor IIF alp...    30   4.3  
At4g32620.1 68417.m04644 expressed protein predicted protein T10...    29   5.7  
At1g69210.1 68414.m07923 expressed protein                             29   9.9  
At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger) fa...    29   9.9  

>At5g61910.3 68418.m07772 expressed protein
          Length = 742

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 20/78 (25%), Positives = 31/78 (39%)

Query: 9   ANGSLCRKLFFEEHSDIDHYDSEQTDDEIHAEPRPPSSYEAHTPIIFSPDLSRDLVTKGM 68
           ANGS+ R  F+   S  +   S+Q +        P +S  ++T     PD+    V +  
Sbjct: 378 ANGSVYRSEFYNSASQKEGEASQQHEIPAGTYHHPEASTVSNTTKSMQPDMQAVSVAQSH 437

Query: 69  KRTFGTPLKKSSSAQRKP 86
             T G P      A + P
Sbjct: 438 TETAGYPTPAHGEASQPP 455


>At5g61910.2 68418.m07771 expressed protein
          Length = 738

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 20/78 (25%), Positives = 31/78 (39%)

Query: 9   ANGSLCRKLFFEEHSDIDHYDSEQTDDEIHAEPRPPSSYEAHTPIIFSPDLSRDLVTKGM 68
           ANGS+ R  F+   S  +   S+Q +        P +S  ++T     PD+    V +  
Sbjct: 374 ANGSVYRSEFYNSASQKEGEASQQHEIPAGTYHHPEASTVSNTTKSMQPDMQAVSVAQSH 433

Query: 69  KRTFGTPLKKSSSAQRKP 86
             T G P      A + P
Sbjct: 434 TETAGYPTPAHGEASQPP 451


>At5g61910.1 68418.m07770 expressed protein
          Length = 738

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 20/78 (25%), Positives = 31/78 (39%)

Query: 9   ANGSLCRKLFFEEHSDIDHYDSEQTDDEIHAEPRPPSSYEAHTPIIFSPDLSRDLVTKGM 68
           ANGS+ R  F+   S  +   S+Q +        P +S  ++T     PD+    V +  
Sbjct: 374 ANGSVYRSEFYNSASQKEGEASQQHEIPAGTYHHPEASTVSNTTKSMQPDMQAVSVAQSH 433

Query: 69  KRTFGTPLKKSSSAQRKP 86
             T G P      A + P
Sbjct: 434 TETAGYPTPAHGEASQPP 451


>At3g54620.1 68416.m06043 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription factor
          Length = 403

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 1/83 (1%)

Query: 407 TNISKSNVTNNALKEISNVHWMRVDSGFKDENSADSIQFYPGNENSVKKFSNVEETEMKL 466
           T +  +  T   +  ++ +HW R + G    N+  +    P N N + K +N   T    
Sbjct: 301 TKVKMAEETVKRVTGVNPLHWSRPNMGIPFSNTPSASSSIPPNSNHILKPAN-SSTNTSA 359

Query: 467 ANKEGTADDFDRFLVQSCNKDAM 489
              +    +   FL +  N++ M
Sbjct: 360 GLAQNQRVETANFLPEQVNREGM 382


>At4g16150.1 68417.m02450 calmodulin-binding protein similar to
           anther ethylene-upregulated calmodulin-binding protein
           ER1 GI:11612392 from [Nicotiana tabacum]
          Length = 906

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 20  EEHSDIDHYDSEQTDDEIHAEPRPP-SSYEAHTPIIFSPDLSRDLVTKGMKRTFGTPLKK 78
           +EH  + HY   +   E+HA P  P +SY +      SP +  +  + G+  T  T    
Sbjct: 129 QEHIVLVHY---RETHEVHAAPATPGNSYSSSITDHLSPKIVAEDTSSGVHNTCNTVRSN 185

Query: 79  SSSAQRKPFRNKILDVVDFGE 99
           S  ++    R   ++ +D+ E
Sbjct: 186 SLGSRNHEIRLHEINTLDWDE 206


>At4g12610.1 68417.m01987 transcription initiation factor IIF alpha
           subunit (TFIIF-alpha) family protein low similarity to
           SP|Q05913 Transcription initiation factor IIF, alpha
           subunit (TFIIF-alpha) (Transcription factor 5, large
           chain) (TF5A) {Drosophila melanogaster}; contains Pfam
           profile PF05793: Transcription initiation factor IIF,
           alpha subunit (TFIIF-alpha)
          Length = 543

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 13/41 (31%), Positives = 25/41 (60%)

Query: 445 FYPGNENSVKKFSNVEETEMKLANKEGTADDFDRFLVQSCN 485
           +Y  N+ +  K   +EE E K+ N+  TAD + R+++++ N
Sbjct: 157 WYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKAAN 197


>At4g32620.1 68417.m04644 expressed protein predicted protein
           T10M13.8, Arabidopsis thaliana
          Length = 1544

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 18  FFEEHSDIDHYDSEQTDDEIHAEPRPPSSYEAHTP 52
           F  EHS++      QTD+ I    R   S + HTP
Sbjct: 849 FTNEHSELSLKSKSQTDEPIITSSRAQESKDLHTP 883


>At1g69210.1 68414.m07923 expressed protein
          Length = 305

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 246 DAQATWSIVEETNAQQAVRDGCIKLQTNEIQSSTRXXXXXXXXXLDDTPIKGKCKSYRAH 305
           D   T S VEETN+++AV+ G   L++ + +S              D   KG+  S +  
Sbjct: 227 DMPMTVSYVEETNSRKAVKSGVFLLESIDAESDNCVWKLADVRENRDPESKGRPLSRKQK 286

Query: 306 EISKIRVP 313
           ++ +I +P
Sbjct: 287 DL-RITLP 293


>At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger)
           family protein contains a Zinc finger, C3HC4 type (RING
           finger) signature, PROSITE:PS00518
          Length = 688

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 9/80 (11%)

Query: 400 KPSELTVTNISKSNVTNNALKEISNVHWMRVDSGFKDENSADSIQFYPGNENSVKKFSNV 459
           +P E    N ++S+V +    E+S +         K + ++ S+       +S    SN 
Sbjct: 84  RPVEKPEVNFAESDVVDCLADELSRL---------KVKQNSHSVNMEEKFHHSSSDHSNC 134

Query: 460 EETEMKLANKEGTADDFDRF 479
           EE+E+K A  E  AD  D +
Sbjct: 135 EESELKRAESEEIADGVDEY 154


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.312    0.126    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,195,896
Number of Sequences: 28952
Number of extensions: 435112
Number of successful extensions: 1060
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1054
Number of HSP's gapped (non-prelim): 10
length of query: 519
length of database: 12,070,560
effective HSP length: 84
effective length of query: 435
effective length of database: 9,638,592
effective search space: 4192787520
effective search space used: 4192787520
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)