Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000409-TA|BGIBMGA000409-PA|undefined
         (108 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esteras...    21   2.8  
AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.      21   2.8  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    20   4.8  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        20   6.4  
AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.      20   6.4  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    20   6.4  
AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esteras...    19   8.4  

>AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esterase
           protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 39  PDPALERIAEEATDNPGMCKIYKQKSNGSFRWD 71
           P   L +I+EE  +  G+ K+Y    +G F  D
Sbjct: 255 PVDKLLQISEEVANIWGLKKVYAPVVDGEFLTD 287


>AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.
          Length = 515

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 39  PDPALERIAEEATDNPGMCKIYKQKSNGSFRWD 71
           P   L +I+EE  +  G+ K+Y    +G F  D
Sbjct: 253 PVDKLLQISEEVANIWGLKKVYAPVVDGEFLTD 285


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 20.2 bits (40), Expect = 4.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 32  NSQFEPSPDPALERI 46
           N+Q E  PDP L R+
Sbjct: 91  NTQEEEPPDPQLMRL 105



 Score = 20.2 bits (40), Expect = 4.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 87  NSQFEPSPDPALERI 101
           N+Q E  PDP L R+
Sbjct: 91  NTQEEEPPDPQLMRL 105


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 36  EPSPDPALERIAEEATDN 53
           EP+   +L R+A  A DN
Sbjct: 527 EPNMTDSLTRLANSALDN 544


>AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.
          Length = 517

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 45  RIAEEATDNPGMCKIYKQKSNGSFRWD 71
           +I+EE  +  G+ K+Y    +G F  D
Sbjct: 261 QISEEVANIWGLKKVYAPVVDGEFLTD 287


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 32  NSQFEPSPDPALERIAEEATDN 53
           ++ FE  P+P    +A+ A D+
Sbjct: 81  DNHFEQYPNPTYYNLADPARDS 102



 Score = 19.4 bits (38), Expect = 8.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 87  NSQFEPSPDPALERIAEEATD 107
           ++ FE  P+P    +A+ A D
Sbjct: 81  DNHFEQYPNPTYYNLADPARD 101


>AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esterase
           protein.
          Length = 515

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 39  PDPALERIAEEATDNPGMCKIYKQKSNGSFRWD 71
           P   L +I+E+  +  G+ K+Y    +G F  D
Sbjct: 253 PVDKLLQISEKVANIWGLKKVYAPVVDGEFLTD 285


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.130    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,618
Number of Sequences: 317
Number of extensions: 1065
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 108
length of database: 114,650
effective HSP length: 49
effective length of query: 59
effective length of database: 99,117
effective search space:  5847903
effective search space used:  5847903
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)
S2: 38 (19.4 bits)