Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000409-TA|BGIBMGA000409-PA|undefined
         (108 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    24   4.6  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    24   6.0  

>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 33  SQFEPSPDPALERIAEEATDNPGMCKIY 60
           S F PSP   L R+A    DN G  K+Y
Sbjct: 305 SSFNPSPLMTLSRLAAGEPDNNG--KVY 330


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 37  PSPDPALERIAEEATDNPGMCKIYKQKSNGSFRWDIDQ 74
           PS DP L  I E  T    + ++YK K   +   D+ Q
Sbjct: 690 PSKDPQLFTIEEAFTTVHHLVRLYKVKKPDTLGRDLKQ 727


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.130    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 539,081
Number of Sequences: 5004
Number of extensions: 20827
Number of successful extensions: 36
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 2
length of query: 108
length of database: 2,362,478
effective HSP length: 64
effective length of query: 44
effective length of database: 2,042,222
effective search space: 89857768
effective search space used: 89857768
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)