Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000409-TA|BGIBMGA000409-PA|undefined
(108 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1152 + 24720397-24720636,24720739-24720951,24721617-247216... 27 3.1
12_02_1113 - 26165074-26165889,26166077-26166202,26166294-261664... 27 4.1
07_03_0887 - 22299783-22300913,22301241-22301569,22301958-22302090 26 7.2
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291... 26 7.2
02_05_1200 - 34922073-34922273,34922397-34922469,34922976-349230... 26 7.2
07_01_0044 - 348439-349539,351979-352301,352418-352550 25 9.6
>08_02_1152 +
24720397-24720636,24720739-24720951,24721617-24721697,
24721781-24721867,24721970-24722065,24722179-24722232,
24722326-24723375,24723468-24723507,24723551-24723756
Length = 688
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 5 YKQKSNGSFRWDIDQACTLVP-TEIVACNSQFEPSPDPALERIAEEAT 51
YK+ N S + + +P EI+ N++FEP PD + +++ T
Sbjct: 320 YKRFLNASADLESSKDSVTIPGNEILVPNTKFEPDPDDVGQDFSQDNT 367
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 60 YKQKSNGSFRWDIDQACTLVP-TEIVACNSQFEPSPDPALERIAEEAT 106
YK+ N S + + +P EI+ N++FEP PD + +++ T
Sbjct: 320 YKRFLNASADLESSKDSVTIPGNEILVPNTKFEPDPDDVGQDFSQDNT 367
>12_02_1113 -
26165074-26165889,26166077-26166202,26166294-26166457,
26166539-26166576,26166670-26166885,26166984-26167145,
26167212-26167497,26167585-26167761,26167864-26167971,
26168076-26168175,26168283-26168359,26168608-26168803,
26169032-26169363,26169476-26169589,26169651-26169753
Length = 1004
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 23 LVPTEIVACNS--QFEPSPDPALERIAEEATDNPGMCK 58
+ P E+ + S Q PSP PA+ A EAT N G+ +
Sbjct: 106 IAPLELFSGPSPPQGPPSPSPAIGGAALEATSNDGVAE 143
>07_03_0887 - 22299783-22300913,22301241-22301569,22301958-22302090
Length = 530
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 8 KSNGSFRWDIDQACTLVPTEIVACNSQFEP-SPDPALER 45
K G + W + A VP I+A + F P +P+ ++R
Sbjct: 196 KIKGGWGWRVSLALAAVPAAIIAVGALFLPDTPNSLIDR 234
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 63 KSNGSFRWDIDQACTLVPTEIVACNSQFEP-SPDPALER 100
K G + W + A VP I+A + F P +P+ ++R
Sbjct: 196 KIKGGWGWRVSLALAAVPAAIIAVGALFLPDTPNSLIDR 234
>07_01_0389 -
2915191-2915604,2915696-2915752,2915867-2915922,
2916053-2916113,2916243-2916365,2916505-2916537,
2916617-2916709,2916839-2916934,2917025-2917203,
2917344-2917530,2918051-2918184,2918311-2918518,
2918598-2918633,2918785-2919241,2919633-2919736,
2920489-2920569,2920646-2920697,2920837-2920876,
2920991-2921085,2921241-2921383,2921899-2922006,
2922120-2922221,2922302-2922348,2922425-2922554,
2923173-2923304,2923404-2923616,2923709-2923963,
2924053-2924799
Length = 1460
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 32 NSQFEPSPDPALERIAEEATDNPGMCK 58
N +PSP + R+ E T+NP CK
Sbjct: 843 NRDSQPSPSGMMSRVTEHETNNP--CK 867
>02_05_1200 -
34922073-34922273,34922397-34922469,34922976-34923019,
34923107-34923183,34923433-34923529,34923668-34924062,
34926577-34926620,34926702-34926770,34926856-34926956,
34927689-34927856,34927940-34928141,34928269-34928708,
34928786-34928884,34929123-34929263
Length = 716
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 38 SPDPALERIAEEATDNPGMCKIYKQKSNGSFRWDIDQACTLVPTEIVACNSQFEPSPDPA 97
SP L + E + + + S GS +D T P+ + C++Q S P
Sbjct: 521 SPSTNLAKQNEWFSSGTSLQYLESSVSAGSVLKAVDATST-TPSNYLHCHAQRNTSNPPN 579
Query: 98 LERIAEEATDK 108
I EAT K
Sbjct: 580 FNEICSEATPK 590
>07_01_0044 - 348439-349539,351979-352301,352418-352550
Length = 518
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 63 KSNGSFRWDIDQACTLVPTEIVACNSQFEP-SPDPALERIAEEATDK 108
K + W + A VP I+ S F P +P+ ++R EA ++
Sbjct: 194 KIKAGWGWRVSLALAAVPAAIITLGSLFLPDTPNSLIDRGHPEAAER 240
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.130 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,628,843
Number of Sequences: 37544
Number of extensions: 145029
Number of successful extensions: 296
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 11
length of query: 108
length of database: 14,793,348
effective HSP length: 72
effective length of query: 36
effective length of database: 12,090,180
effective search space: 435246480
effective search space used: 435246480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)
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