Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000409-TA|BGIBMGA000409-PA|undefined
(108 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46220| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_17041| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0) 28 1.9
SB_20156| Best HMM Match : GED (HMM E-Value=6.8e-16) 27 2.5
SB_45456| Best HMM Match : DUF963 (HMM E-Value=0.00083) 27 3.2
SB_20903| Best HMM Match : Extensin_2 (HMM E-Value=0.3) 26 5.7
SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36) 26 7.5
SB_53526| Best HMM Match : Cohesin (HMM E-Value=8.4) 26 7.5
SB_34347| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.9
>SB_46220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 29 VACNSQFEPSPDPALERIAEEATDNPGMCKIYKQKSNGSFRWDIDQAC 76
+AC+S+ + PDP L +E + G ++ +N RWD C
Sbjct: 75 IACDSKLKWEPDPMLITCLKECRKDIGDGWCDEKNNNQHCRWDGGDCC 122
>SB_17041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 668
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 29 VACNSQFEPSPDPALERIAEEATDNPGMCKIYKQKSNGSFRWDIDQAC 76
+AC+S+ + PDP L +E + G ++ +N RWD C
Sbjct: 548 IACDSKLKWEPDPMLITCLKECRKDIGDGWCDEKNNNQHCRWDGGDCC 595
>SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)
Length = 667
Score = 27.9 bits (59), Expect = 1.9
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 2 CKIYKQKSNGSFRWDIDQACTLVPTEIVACNSQFEPSPDPALERIAEEATDNPGMCKIYK 61
C+I ++N S +++A + +PT C+++F S ER EE +D CK YK
Sbjct: 424 CRIDISRNNCSRNLAVEKAVSELPTACQFCDNEFPRSIASIHER--EECSDRLVRCK-YK 480
Query: 62 Q 62
+
Sbjct: 481 R 481
Score = 26.6 bits (56), Expect = 4.3
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 45 RIAEEATDNPGMCKIYKQKSNGSFRWDIDQACTLVPTEIVACNSQFEPSPDPALERIAEE 104
R+ +E P C+I ++N S +++A + +PT C+++F S ER EE
Sbjct: 413 RLKDEQATCPS-CRIDISRNNCSRNLAVEKAVSELPTACQFCDNEFPRSIASIHER--EE 469
Query: 105 ATDK 108
+D+
Sbjct: 470 CSDR 473
>SB_20156| Best HMM Match : GED (HMM E-Value=6.8e-16)
Length = 172
Score = 27.5 bits (58), Expect = 2.5
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 43 LERIAEEATDNPGMCKIYKQKSNG-SFRWDIDQACTLVPTEIVACNSQFEPSPDPA 97
+E EEA M K+Y DID +PT NS F+P PA
Sbjct: 96 MEESEEEAQRREEMLKMYHSTKEALQIVGDIDTHTISIPTPPPVDNSDFDPRRPPA 151
>SB_45456| Best HMM Match : DUF963 (HMM E-Value=0.00083)
Length = 337
Score = 27.1 bits (57), Expect = 3.2
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 24 VPTEIVACNSQFEPSPDPALERIAEEATDNPGMCKIYKQKSNGSFRWDIDQACTLVPTEI 83
+P+ +VAC S PSP A + ++ P CK + + + D +P+ +
Sbjct: 112 IPSSLVACESDGIPSPLVACK--FDDIPSPPVACK-FDDIPSTLVACEFDG----IPSSL 164
Query: 84 VACNSQFEPSP 94
V C S PSP
Sbjct: 165 VTCESDGIPSP 175
>SB_20903| Best HMM Match : Extensin_2 (HMM E-Value=0.3)
Length = 713
Score = 26.2 bits (55), Expect = 5.7
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 7 QKSNGSFRWDIDQACTLVP-TEIVACNSQFEPSPDPALERIAEEAT-----DNPGMCKIY 60
QK + WD D A T P T+ + + F P P P + +E T D PG
Sbjct: 370 QKVARTASWD-DPAMTPTPATQEMNRDEMFPPMPPPQPPQARQEPTNKPSEDKPGGKDKS 428
Query: 61 KQKSNGS 67
K SNGS
Sbjct: 429 KPPSNGS 435
>SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)
Length = 972
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 55 GMCKIYKQKSNGSFRWDIDQAC----TLVPTEIVACNSQFEPSPD 95
G+C Y ++ G F+W I Q+ + + V SQ EP P+
Sbjct: 742 GLCLTYAKQLTGMFQWCIRQSAEVENNIKSVKRVMEYSQVEPEPE 786
>SB_53526| Best HMM Match : Cohesin (HMM E-Value=8.4)
Length = 248
Score = 25.8 bits (54), Expect = 7.5
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 25 PTEIVA-CNSQFEPSPDPALERIAEEATDNPG--MCKIYKQKSNG----SFRWDIDQACT 77
PT + A N P+P P ++ +A+ NP K+ S + + ++D + T
Sbjct: 119 PTPVTAKVNVDASPTPTPVTAKVNADASPNPTPVTAKVNADTSPTPTPVTAKVNVDASPT 178
Query: 78 LVPTEIVA-CNSQFEPSPDPALERIAEE 104
PT + A N+ P+P P ++ E
Sbjct: 179 --PTPVTAKVNADTSPTPTPVTAKVCVE 204
>SB_34347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 508
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 27 EIVACNSQFEPSPDPALERIAEEATDNP 54
E N EP+P PA +R E T +P
Sbjct: 169 ETSVINEAEEPAPSPAPDRSTSEPTSSP 196
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.130 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,137,212
Number of Sequences: 59808
Number of extensions: 163856
Number of successful extensions: 299
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 287
Number of HSP's gapped (non-prelim): 19
length of query: 108
length of database: 16,821,457
effective HSP length: 72
effective length of query: 36
effective length of database: 12,515,281
effective search space: 450550116
effective search space used: 450550116
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)
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