GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000409-TA|BGIBMGA000409-PA|undefined
         (108 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34533-6|CAA84300.2|  371|Caenorhabditis elegans Hypothetical pr...    27   2.8  
AY158690-1|AAN41642.1|  371|Caenorhabditis elegans choline kinas...    27   2.8  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    27   3.7  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    27   3.7  
AF003151-18|AAK18915.1|  160|Caenorhabditis elegans Hypothetical...    26   4.9  

>Z34533-6|CAA84300.2|  371|Caenorhabditis elegans Hypothetical
           protein B0285.8 protein.
          Length = 371

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 5/37 (13%)

Query: 33  SQFEPSPDPALERIAEEATDNP----GMCKIYKQKSN 65
           + F  S  P + RI+EE TDNP    G C+ Y    N
Sbjct: 256 ADFRDSTPPGI-RISEELTDNPPNLQGFCEAYVDADN 291


>AY158690-1|AAN41642.1|  371|Caenorhabditis elegans choline kinase
           CKB-1 protein.
          Length = 371

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 5/37 (13%)

Query: 33  SQFEPSPDPALERIAEEATDNP----GMCKIYKQKSN 65
           + F  S  P + RI+EE TDNP    G C+ Y    N
Sbjct: 256 ADFRDSTPPGI-RISEELTDNPPNLQGFCEAYVDADN 291


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 18   DQACTLVPTEIVACNSQFEPSPDPALERIAEEATDNPGMC 57
            DQ CT+V  +I    S+ + S +   E + E   D P  C
Sbjct: 2740 DQLCTVVADDIGLAASKVQCSCNDTYELVQEPGKDYPTQC 2779


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 18   DQACTLVPTEIVACNSQFEPSPDPALERIAEEATDNPGMC 57
            DQ CT+V  +I    S+ + S +   E + E   D P  C
Sbjct: 2740 DQLCTVVADDIGLAASKVQCSCNDTYELVQEPGKDYPTQC 2779


>AF003151-18|AAK18915.1|  160|Caenorhabditis elegans Hypothetical
          protein D1007.9 protein.
          Length = 160

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 43 LERIAEEATDNPGMCKIYKQKSNG-SFRWDIDQACT 77
          +E    E ++N  +C+I+ +K+NG SF    D  C+
Sbjct: 13 MEYFITEFSENSKLCRIFIEKTNGISFWGGRDHVCS 48


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.130    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,093,664
Number of Sequences: 27539
Number of extensions: 127185
Number of successful extensions: 282
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 278
Number of HSP's gapped (non-prelim): 6
length of query: 108
length of database: 12,573,161
effective HSP length: 71
effective length of query: 37
effective length of database: 10,617,892
effective search space: 392862004
effective search space used: 392862004
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)