GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000409-TA|BGIBMGA000409-PA|undefined
         (108 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            24   0.35 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   1.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   2.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   2.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   2.5  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    19   9.9  

>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 24.2 bits (50), Expect = 0.35
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 2  CKIYKQKSNGSFRWDIDQACTLV 24
          C I  +  NGS  W +   CT+V
Sbjct: 27 CSIKPKDHNGSIYWSMYHLCTVV 49



 Score = 24.2 bits (50), Expect = 0.35
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 57 CKIYKQKSNGSFRWDIDQACTLV 79
          C I  +  NGS  W +   CT+V
Sbjct: 27 CSIKPKDHNGSIYWSMYHLCTVV 49


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 33  SQFEPSPDPALERIAE 48
           SQ  P+  P +ER+AE
Sbjct: 735 SQMPPTAQPRMERLAE 750



 Score = 21.8 bits (44), Expect = 1.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 88  SQFEPSPDPALERIAE 103
           SQ  P+  P +ER+AE
Sbjct: 735 SQMPPTAQPRMERLAE 750


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)

Query: 38  SPDPALERIAEEATDNPGMCKI 59
           SPDPA+ R  +E   N  MC +
Sbjct: 202 SPDPAINRRLKETYSN--MCAL 221


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)

Query: 38  SPDPALERIAEEATDNPGMCKI 59
           SPDPA+ R  +E   N  MC +
Sbjct: 202 SPDPAINRRLKETYSN--MCAL 221


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)

Query: 38  SPDPALERIAEEATDNPGMCKI 59
           SPDPA+ R  +E   N  MC +
Sbjct: 202 SPDPAINRRLKETYSN--MCAL 221


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 19.4 bits (38), Expect = 9.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 35  FEPSPDPALERIAEEATDNPG 55
           FEP   P L+ ++E    N G
Sbjct: 272 FEPHRIPQLQEVSEFLKKNTG 292


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.130    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,083
Number of Sequences: 429
Number of extensions: 1529
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 108
length of database: 140,377
effective HSP length: 50
effective length of query: 58
effective length of database: 118,927
effective search space:  6897766
effective search space used:  6897766
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)
S2: 38 (19.4 bits)