GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000409-TA|BGIBMGA000409-PA|undefined
         (108 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45120.1 68415.m05615 zinc finger (C2H2 type) family protein ...    30   0.29 
At5g13460.1 68418.m01549 calmodulin-binding family protein low s...    28   1.2  
At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit (...    27   2.7  
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1...    25   8.1  

>At2g45120.1 68415.m05615 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 314

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 17/66 (25%), Positives = 31/66 (46%)

Query: 34  QFEPSPDPALERIAEEATDNPGMCKIYKQKSNGSFRWDIDQACTLVPTEIVACNSQFEPS 93
           +F+ + D  +E   E +  NP   +  + +  GSF +D ++  T  P+E+VA       +
Sbjct: 83  EFDFAEDDDVESETESSRINPTRRRSKRTRKLGSFDFDFEKLTTSQPSELVAEPEHHSSA 142

Query: 94  PDPALE 99
            D   E
Sbjct: 143 SDTTTE 148


>At5g13460.1 68418.m01549 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 443

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 4   IYKQKSNGSFRWDIDQACTLVPTEIVACNSQFEPSPDPALERIAEEATDNPGMCKIYKQK 63
           I K  +NG  RWD D   T    E V  + +         ERI E A  +    + Y+++
Sbjct: 194 ILKVDTNGQKRWD-DSLLTKEEKEAVVMSKK---EASLRRERIKEYAVTHRKSAESYQKR 249

Query: 64  SNGSFRWDIDQ 74
           SN  +++ +D+
Sbjct: 250 SNTKWKYWLDE 260


>At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit
          (IRX3) identical to gi:5230423
          Length = 1026

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/46 (34%), Positives = 21/46 (45%)

Query: 29 VACNSQFEPSPDPALERIAEEATDNPGMCKIYKQKSNGSFRWDIDQ 74
          VACN    P+  P  E    E T N   CK   ++  GS R + D+
Sbjct: 54 VACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGDE 99


>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
           (KTN1) [Arabidopsis thaliana] GI:14133602
          Length = 523

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 43  LERIAEEATDNPGMCKIYKQKSNGSFRWDIDQA 75
           ++ ++  AT+  G  KI    +  +F WDID+A
Sbjct: 367 VDGVSNTATNEDGSRKIVMVLAATNFPWDIDEA 399


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.130    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,135
Number of Sequences: 28952
Number of extensions: 114483
Number of successful extensions: 228
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 224
Number of HSP's gapped (non-prelim): 5
length of query: 108
length of database: 12,070,560
effective HSP length: 71
effective length of query: 37
effective length of database: 10,014,968
effective search space: 370553816
effective search space used: 370553816
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)