Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000407-TA|BGIBMGA000407-PA|IPR006627|Protein of unknown
function TDU
(333 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24400| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 4e-04
SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11) 34 0.19
SB_52266| Best HMM Match : DUF1665 (HMM E-Value=1.3) 33 0.25
SB_57582| Best HMM Match : efhand (HMM E-Value=3.8e-05) 33 0.43
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.43
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41) 32 0.57
SB_50893| Best HMM Match : SH3_1 (HMM E-Value=2e-33) 32 0.76
SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.76
SB_6388| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_46444| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_56335| Best HMM Match : RBM1CTR (HMM E-Value=3.6) 31 1.3
SB_26279| Best HMM Match : S-antigen (HMM E-Value=3) 31 1.3
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_52268| Best HMM Match : SecA_PP_bind (HMM E-Value=0.33) 30 2.3
SB_35722| Best HMM Match : CutA1 (HMM E-Value=8.3) 30 2.3
SB_59660| Best HMM Match : Mlp (HMM E-Value=0.35) 30 3.1
SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16) 30 3.1
SB_52135| Best HMM Match : RCSD (HMM E-Value=4.8) 30 3.1
SB_29074| Best HMM Match : Kazal_2 (HMM E-Value=3.3e-16) 30 3.1
SB_13658| Best HMM Match : MbeD_MobD (HMM E-Value=2.3) 30 3.1
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028) 30 3.1
SB_43512| Best HMM Match : RNA_pol_delta (HMM E-Value=4.7) 30 3.1
SB_53272| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_43693| Best HMM Match : ACBP (HMM E-Value=2.7) 29 4.0
SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5) 29 5.3
SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0) 29 5.3
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01) 29 5.3
SB_9096| Best HMM Match : Acid_phosphat_A (HMM E-Value=0.18) 29 5.3
SB_53789| Best HMM Match : ResIII (HMM E-Value=0.044) 29 5.3
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 29 5.3
SB_43422| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_58267| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.5) 29 7.0
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0
SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066) 29 7.0
SB_26383| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0
SB_45602| Best HMM Match : Ribosomal_S30AE (HMM E-Value=8) 29 7.0
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 29 7.0
SB_3975| Best HMM Match : Sigma70_ECF (HMM E-Value=7.3) 29 7.0
SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52) 28 9.3
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_50266| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_38681| Best HMM Match : RVT_1 (HMM E-Value=0.0082) 28 9.3
SB_21551| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0016) 28 9.3
SB_14992| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_56504| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_33858| Best HMM Match : RVT_1 (HMM E-Value=3.7e-21) 28 9.3
SB_23978| Best HMM Match : ERF (HMM E-Value=2) 28 9.3
SB_21388| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_15219| Best HMM Match : DUF646 (HMM E-Value=4.5) 28 9.3
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_24400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 813
Score = 42.7 bits (96), Expect = 4e-04
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 256 VDDHFAKALGDTWRQLQTSKSKENEKTQLNHKGGVDDHFSKALGETWQKIQSSKHNLNSD 315
V++HF ++LG+ + + KT G VD+HF+KALGETW +I + H
Sbjct: 151 VEEHFRRSLGEDYIHVSPI-----HKTVA---GSVDEHFAKALGETWSQINTGVHTQKKS 202
Query: 316 NEKKDQ 321
N Q
Sbjct: 203 NSPSAQ 208
Score = 37.1 bits (82), Expect = 0.020
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 255 SVDDHFAKALGDTWRQLQT 273
SVD+HFAKALG+TW Q+ T
Sbjct: 176 SVDEHFAKALGETWSQINT 194
Score = 35.5 bits (78), Expect = 0.061
Identities = 12/19 (63%), Positives = 18/19 (94%)
Query: 189 DPVIDEHFRRSLGDDYMNL 207
DP ++EHFRRSLG+DY+++
Sbjct: 148 DPFVEEHFRRSLGEDYIHV 166
>SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)
Length = 1012
Score = 33.9 bits (74), Expect = 0.19
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 21 SMEPPQSPKFSLPLWQPWMPSPEKETPSTASSGESEGDRTLSPETPRSQSKEATGK 76
S + PQ+P +LP Q P EK P+TA+ G + L+ P +S E G+
Sbjct: 916 SPKTPQTPA-TLPTTQTPEPGTEKTMPTTATPGTGQPTTPLTTSVPSDRSTEQQGE 970
>SB_52266| Best HMM Match : DUF1665 (HMM E-Value=1.3)
Length = 697
Score = 33.5 bits (73), Expect = 0.25
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 5/114 (4%)
Query: 216 QPGPKPNMKDRASSPILFK---TEEPPKPTKIIAMEIDDPSLSVDDHFAKALGDTWRQLQ 272
+P PKP+ + S K + KPTKII + + L ++ F G + +
Sbjct: 127 RPAPKPSAPPQKYSDPKAKYGVSVAKKKPTKIIPIFLPSECL-LNSLFQGRAGSD-KNKE 184
Query: 273 TSKSKENEKTQLNHKGGVDDHFSKALGETWQKIQSSKHNLNSDNEKKDQTTKII 326
++ + ++ N DH K + W++ Q + NSD K +I+
Sbjct: 185 DARERRRKELMQNEDQKYQDHMKKVQQQRWERQQKNAAKKNSDPGPKPAKAEIV 238
>SB_57582| Best HMM Match : efhand (HMM E-Value=3.8e-05)
Length = 520
Score = 32.7 bits (71), Expect = 0.43
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 44 KETPSTASSGESEGDRTLSPETPRSQSKEATGKWRRERRSIRLPEYRPKENGKMALRSQS 103
KE P T S E R SP+ P+S ++ A+ + R P+ RP+ + A SQS
Sbjct: 275 KEEPETTQSSEQLPKRPSSPQRPKSPNRPASPQRPRSPNRPSSPQ-RPRSPNRPASTSQS 333
>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 791
Score = 32.7 bits (71), Expect = 0.43
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 6/123 (4%)
Query: 27 SPKFSLPLWQPWMPSPEKETPSTASSGESEGDRTLSPETPRSQSKEATGKWRRER-RSIR 85
SPK P S + S++SSG S R+ S TP S S R +S
Sbjct: 185 SPKRRSPRRSSSSYSSRSRSSSSSSSGSSHSSRSQS-HTPSSGSGSRNSSRSASRSQSHS 243
Query: 86 LPEYRPKENGKMALRSQSFNERRTVVPFTRAQPHS-DGDLSDETDDGPANLTVNGKKAPP 144
+ R K + RSQS + R+V +R++ S G S P++ + G ++P
Sbjct: 244 VSRSRSKSLSQSRSRSQSHSASRSV---SRSRSRSRSGSRSRTRSHSPSDHSSVGSRSPS 300
Query: 145 EYP 147
+ P
Sbjct: 301 KQP 303
>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
Length = 638
Score = 32.3 bits (70), Expect = 0.57
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 24 PPQSPKFSLPLWQPWMPSPEKETPSTASSGESEGDRTLSP-ETPRSQSKEATGKWRRERR 82
P QSP+ LP W P SP +T S R+ SP R +S+ + W +R
Sbjct: 214 PHQSPE-RLPSWSPVRQSPFNKTHRRLSPPR----RSPSPYRNMRIKSRSPSPYWGSRQR 268
Query: 83 SIRLPEYRPKENGKMALRSQSFNERRTVVPF 113
S+ P YR + +L R+ P+
Sbjct: 269 SLTPPAYRKSRHRSRSLSPYRKKYSRSPSPY 299
>SB_50893| Best HMM Match : SH3_1 (HMM E-Value=2e-33)
Length = 665
Score = 31.9 bits (69), Expect = 0.76
Identities = 20/78 (25%), Positives = 35/78 (44%)
Query: 23 EPPQSPKFSLPLWQPWMPSPEKETPSTASSGESEGDRTLSPETPRSQSKEATGKWRRERR 82
E P+ K P+ P +P+K+ P+ + S S R P P Q +EA +R R
Sbjct: 159 EEPKEKKTPPPVVGPETLTPKKQQPTASHSLGSSMKRKAPPVPPSPQPQEAQAPAKRVLR 218
Query: 83 SIRLPEYRPKENGKMALR 100
+ +Y + ++ L+
Sbjct: 219 AKVTYDYEQQNEDELELK 236
>SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 31.9 bits (69), Expect = 0.76
Identities = 33/124 (26%), Positives = 47/124 (37%), Gaps = 6/124 (4%)
Query: 27 SPKFSLPLWQPWMPSPEKETPSTASSGESEGDRTLSPE----TPRSQSKEATGKWRRERR 82
SP+ SLP + +PSPE PS S S SPE +P
Sbjct: 752 SPEHSLPSQEHSLPSPEHSQPSPEHSQPSPEHSQPSPEHSQPSPEHSQPSPEHCQPSPEH 811
Query: 83 SIRLPEYR-PKENGKMALRSQSFNERRTVVPFTRAQPHSDGDLSDETDDGPANLTVNGKK 141
S PE+ P + + + S E+ V T AQ ++ DL +T G ++
Sbjct: 812 SQPSPEHSLPSQEHSLPSPTSSLGEQVCDVQSTSAQSYT-SDLVLQTPGGAVEHSLASAS 870
Query: 142 APPE 145
P E
Sbjct: 871 KPVE 874
>SB_6388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1520
Score = 31.5 bits (68), Expect = 1.00
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 43 EKETPSTA-SSGESEGDRTLSPETPRSQSKEATGKWRRERRSIRLPEYRPKENGKMALRS 101
E E S A SSG+++GD SP P+ Q + R+S+ + ++ + +
Sbjct: 553 ESEVCSGALSSGDNDGDNESSPR-PKGQRLRKKRLSKERRKSVDMEHHKSSASAGVPSPP 611
Query: 102 QSFNERRTVVPFTRAQPHSDGDLSDETD 129
F ER T V S +L D T+
Sbjct: 612 SDFKERITKVDDLPYDSTSASELEDFTN 639
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 31.5 bits (68), Expect = 1.00
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 25 PQSPKFSLPLWQPWMPSPE--KETPSTASSGESEGDRTLSPETPRSQSKEATGKWRRERR 82
PQ P + P+ P P P K + ++AS GES+G+ TL + SQ+K T + R R
Sbjct: 2485 PQPPLLT-PIASPIKPGPSGVKGSATSASKGESKGE-TLRRQLLPSQTKTLTPELRARHR 2542
>SB_46444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 31.5 bits (68), Expect = 1.00
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 210 KNSENAQPGPKPNMK-DRASSPILFKTEEPPKPTKIIAM--EIDDPSLSVDDHFAKALGD 266
KN +NA K + + +T EP + K I ++ + + D K+ D
Sbjct: 42 KNKQNASQSKKEDRSAQKKKKGAKGRTLEPSQKWKNIGFGGDLVEEEPTSKDKANKSKAD 101
Query: 267 TWRQLQTSKSKENEKTQLNH---KGGVDDHFSKALGETWQKIQSSKHNLNSD 315
Q + SKS+E+ K KG +DD FS++ E+ ++ +S S+
Sbjct: 102 KKPQSRHSKSRESSKDTRQSTRLKGDIDDDFSESSSESEEEEESQDRRQESN 153
>SB_56335| Best HMM Match : RBM1CTR (HMM E-Value=3.6)
Length = 241
Score = 31.1 bits (67), Expect = 1.3
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 56 EGDRTLSPETPRSQSKEATGKWRRERRSIRLPEYRPKENGKMALRSQSFNERRTVVPFTR 115
E +T+S +TP+ K+ T K + + E K A RR + TR
Sbjct: 103 EAFQTMSKKTPKVNGKKGTNKRANGKTARETDETSAPSRPKRAAPGS----RR--MKATR 156
Query: 116 AQPHSDGDLSDETDDGPANLTVNGKKAPPE 145
+ ++ + +TDDG A + K++PP+
Sbjct: 157 EEEVTEHENESDTDDGFATFVIPRKQSPPK 186
>SB_26279| Best HMM Match : S-antigen (HMM E-Value=3)
Length = 613
Score = 31.1 bits (67), Expect = 1.3
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 56 EGDRTLSPETPRSQSKEATGKWRRERRSIRLPEYRPKENGKMALRSQSFNERRTVVPFTR 115
E +T+S +TP+ K+ T K + + E K A RR + TR
Sbjct: 475 EAFQTMSKKTPKVNGKKGTNKRANGKTARETDETSAPSRPKRAAPGS----RR--MKATR 528
Query: 116 AQPHSDGDLSDETDDGPANLTVNGKKAPPE 145
+ ++ + +TDDG A + K++PP+
Sbjct: 529 EEEVTEHENESDTDDGFATFVIPRKQSPPK 558
>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 30.7 bits (66), Expect = 1.7
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 24 PPQSPKFSLPL-WQPWMPSPEKETP----STASSGESEGDRTLSPETPRSQSKEATGKWR 78
PP SP PL P +P PEK TP +T S + ++++P RS +++ R
Sbjct: 519 PPTSPTQQSPLETTPVLPLPEKVTPEPGSTTPPSPPPDSPKSVAPPALRSTAEKVV--MR 576
Query: 79 RERRSIRLP 87
++R+S P
Sbjct: 577 QQRKSGERP 585
>SB_52268| Best HMM Match : SecA_PP_bind (HMM E-Value=0.33)
Length = 774
Score = 30.3 bits (65), Expect = 2.3
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 19/113 (16%)
Query: 25 PQSPKFSLPLWQPWMPSPEK---ETPSTASSGESEGDR-----TLSPETPRSQSKEATGK 76
P P P + PW+ SP+ E SG+S+ R TL P SK+++ K
Sbjct: 413 PAPPPPPTPPFNPWLDSPKHSYAEVLKRGLSGKSQAQRHLKPMTLFPSKSPKDSKKSSRK 472
Query: 77 WRRERRSI-----------RLPEYRPKENGKMALRSQSFNERRTVVPFTRAQP 118
R ERRS R P++N + + + ++ VP + +QP
Sbjct: 473 SRNERRSRSESSPKKERDQREGNGSPRKNEYPSCSGGATSHTQSTVPVSYSQP 525
>SB_35722| Best HMM Match : CutA1 (HMM E-Value=8.3)
Length = 171
Score = 30.3 bits (65), Expect = 2.3
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 39 MPSPEKETPSTASSGESEGDRTLSPETPRSQSKEATGKWRRERRSIRLPEYR 90
+PSP +TPS+ASS +++ D+T +P + + + R +RR ++ P R
Sbjct: 97 LPSPPSKTPSSASS-QAKVDKTPLLPSPPTNTPRPSRIPRLKRRRLQTPTKR 147
>SB_59660| Best HMM Match : Mlp (HMM E-Value=0.35)
Length = 684
Score = 29.9 bits (64), Expect = 3.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 293 HFSKALGETWQKIQSSKHNLNSDNEKKDQTTKIITRSG 330
HF K LG+ ++ +H L+S K D TTK SG
Sbjct: 501 HFGKKLGQLVEEFVELRHQLHSAIGKHDSTTKAKHGSG 538
>SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16)
Length = 1003
Score = 29.9 bits (64), Expect = 3.1
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 21 SMEPPQSPKFSLPLWQPWMPS-PEKETPSTASSGESEGDRTLSPETPRSQSKEATGKWRR 79
S++P PKF ++ S K+ P ++ G++ S P++ E WR
Sbjct: 401 SVQPETEPKFLTHGYKKRNDSFTRKQLPKLL---KALGEQNTSSYRPKASPPEPNTHWRG 457
Query: 80 ERRSIRLPEYRPKENGKMALRSQS 103
+R+ YRP + +++ SQ+
Sbjct: 458 KRKPRSADPYRPSNSRRLSKGSQT 481
>SB_52135| Best HMM Match : RCSD (HMM E-Value=4.8)
Length = 476
Score = 29.9 bits (64), Expect = 3.1
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 7/117 (5%)
Query: 212 SENAQPGPKPNMKDRASSPILFKTEEPPKPTKIIAMEIDDPSLSVDDHFAKALGDTWRQL 271
+E G +P AS+ K + PP +K PS + + +LG
Sbjct: 19 TEKPHQGLEPTTSSSASTEKPIKAKTPPPVSK------KQPSPKLSEKRISSLGSLKSAK 72
Query: 272 QTSKSKENEKTQLNHKGGVDDHFSKALGETWQKIQSSKHNLNSDNEKKDQTTKIITR 328
+S++ E HK F K E + NL S + KD+ K++ R
Sbjct: 73 INHESQDGENIDGPHKTETPA-FKKQTSEHLSSSEKRFQNLKSADNGKDEIQKVVLR 128
>SB_29074| Best HMM Match : Kazal_2 (HMM E-Value=3.3e-16)
Length = 711
Score = 29.9 bits (64), Expect = 3.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 293 HFSKALGETWQKIQSSKHNLNSDNEKKDQTTKIITRSG 330
HF K LG+ ++ +H L+S K D TTK SG
Sbjct: 120 HFGKKLGQLVEEFVELRHQLHSAIGKHDSTTKAKHGSG 157
>SB_13658| Best HMM Match : MbeD_MobD (HMM E-Value=2.3)
Length = 529
Score = 29.9 bits (64), Expect = 3.1
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 5/120 (4%)
Query: 29 KFSLPLWQPWMPSPEKETPSTAS---SGESEGDRTLSPETPRSQSKEATGKWRRERRSIR 85
+F +PL P +PS +P S S S+ RT TPRS ++RR I
Sbjct: 309 EFGIPLEFPSLPSLSTLSPLALSPPVSTPSQQRRTPPSFTPRSSISRRRSDTPKKRRRIS 368
Query: 86 LPEYRP-KENGKMALRSQSFNERRTVVPFTRAQPHSDGDLSDETDDGPANLTVNGKKAPP 144
+P R G++ + ++ R ++ RA + S + P + G APP
Sbjct: 369 VPRRRAGSALGRLTTKKKTPPRRTNLLEAFRAAAGTPTG-SRSSSISPGMRSSFGSIAPP 427
>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
Length = 3809
Score = 29.9 bits (64), Expect = 3.1
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 24 PPQSPKFSLPLWQPWMPSPEKETPSTASSGESEGDR---TLSPETPRSQSKEATGKWRRE 80
P +S P+ QP +E P T +S ESE + T PE S++K
Sbjct: 1640 PEESETEIKPVKQPSEQIEPEEEPVTQTSEESEPEEEPMTQIPEESMSEAKPVVHIPEES 1699
Query: 81 RRSIRLPEYRPKENGK--MALRSQSFNERRTVVPFTRAQPHSDGDLSDET 128
++ + P+E+G +++ ++ + V P T+ S+ D++ T
Sbjct: 1700 EPEVKNSKQTPEESGPEVESVKQKTKEIKMEVKPVTQIPEESEPDVNPLT 1749
>SB_43512| Best HMM Match : RNA_pol_delta (HMM E-Value=4.7)
Length = 241
Score = 29.9 bits (64), Expect = 3.1
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 55 SEGDRTLSPETPRSQSKEATGKWRRERRSIRLPEYRPKENGKMALRSQSFNERRTVVPFT 114
S+ ++PE P S E T ++ P PK AL + S + P
Sbjct: 33 SDATEAVAPEAPASPESENTDDFKEPEAKEETPAAAPKAEDTPALET-SGESKLPDTPVE 91
Query: 115 RAQPHSDGDLSDETDD 130
+ D D D+ DD
Sbjct: 92 DEESEDDDDSFDDGDD 107
>SB_53272| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 29.5 bits (63), Expect = 4.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 275 KSKENEKTQLNHKGGVDDHFSKALGETWQKIQSSKHNLNSDNE 317
K K+ ++ KG +++HF K+ T Q+I + NL D E
Sbjct: 288 KRKKRTSIEVAVKGALENHFCKSPKPTAQEISALAENLGLDKE 330
>SB_43693| Best HMM Match : ACBP (HMM E-Value=2.7)
Length = 354
Score = 29.5 bits (63), Expect = 4.0
Identities = 18/70 (25%), Positives = 29/70 (41%)
Query: 22 MEPPQSPKFSLPLWQPWMPSPEKETPSTASSGESEGDRTLSPETPRSQSKEATGKWRRER 81
M+P ++P+ ++P S E+E + E E SP+ RS T R
Sbjct: 158 MDPTRNPRLAVPYGYVRCSSKEREELLLSQRKEQEHKEQKSPDVKRSPDVRRTPDDARAH 217
Query: 82 RSIRLPEYRP 91
+S +P P
Sbjct: 218 KSPDVPRRSP 227
>SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 29.5 bits (63), Expect = 4.0
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 37 PWMPSPEKETP-STASSGESEGDRTLSPETPRSQS 70
P +PSP P STA G+ D + E PRS +
Sbjct: 1050 PHLPSPSPNQPVSTAQHGDQHDDNDANSEDPRSST 1084
>SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1293
Score = 29.1 bits (62), Expect = 5.3
Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 39 MPSPEKETPSTASSGESEGDRTLSPETPRSQSKEATGKWRRERRSIRLPEYRPKENGKMA 98
+P P ++T S++S SEG + S ++ S + + P P + KM+
Sbjct: 400 VPKPHRKTLSSSSGSSSEGSDSDSSDSDSDSSDD------ENHSLVNSPTKTPADTAKMS 453
Query: 99 LRSQSFNERRTVVPFTRAQPHSDGDLSDETDDGPANLTVN 138
+++ FT +P + + +D ++L++N
Sbjct: 454 NEERAWGLGDLQKAFTAPEPTTKPPTTSTSDPTLSSLSLN 493
>SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)
Length = 585
Score = 29.1 bits (62), Expect = 5.3
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 37 PWMPSPEKETPSTASSGESEGDRTLSPETPRSQSK-EATGKWRRERRSIRLPEYRPKENG 95
PW + + P + SG+S G T P RS+S + R +R + P P+E
Sbjct: 344 PWEELAQTQAPHSRRSGQSSGSET-EPSKRRSRSAYYSDDDVGRRKRHHKRPVVNPQEVA 402
Query: 96 KM 97
K+
Sbjct: 403 KL 404
>SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)
Length = 192
Score = 29.1 bits (62), Expect = 5.3
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 207 LFKKNSENAQPGPKPNMKDRASSPILFKTE-EPPKPTKIIAMEIDDPSLSVDD 258
L ++ SE + G P ++ A S + E + PK ++ DPS+S+DD
Sbjct: 40 LVERQSELRRNGTLPWLRPDAKSQVTINWEGDSPKVDAVVLSTQHDPSISLDD 92
>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
Length = 1776
Score = 29.1 bits (62), Expect = 5.3
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 24 PPQSPKFSLPLWQPWMPSPEKETPSTASSGESEGDRTLSP--ETPRSQSKEAT 74
PP SP + P +P TP T ++ E+ RT +P TPR+ + E T
Sbjct: 153 PPPSPPTTTTTTTPETTAPRTTTPET-TTPETTTPRTTTPVTTTPRTTTPETT 204
>SB_9096| Best HMM Match : Acid_phosphat_A (HMM E-Value=0.18)
Length = 417
Score = 29.1 bits (62), Expect = 5.3
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 251 DPSLSVDDHFAKALGDTWRQLQTSKSKENEKTQLNHKGGVDDHFSKALGETWQKIQSS-K 309
D S + AK ++++ +++ EN+++ N+KG D + K E ++++S
Sbjct: 193 DLSTRTEQKNAKYADGYEKEIENAQTNENQQSNSNYKGSSDGNKVKYAEEFEREVESEIM 252
Query: 310 HNLNSDNEKKDQTTKIITRS 329
H + KK K T +
Sbjct: 253 HAKPINQNKKSNNDKATTEN 272
>SB_53789| Best HMM Match : ResIII (HMM E-Value=0.044)
Length = 942
Score = 29.1 bits (62), Expect = 5.3
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 38 WMPSPEKETPSTASSG---ESEGD-RTLSPETPRSQSKEAT-GKWRRERRSIRLPEYRPK 92
W P + + T+ G E+EG+ R+L E + + T GK R S+ + P+
Sbjct: 333 WAELPTEPSAITSVHGLDFEAEGELRSLCQEKALTSAATKTRGKSARGAHSL-YKQGDPQ 391
Query: 93 ENGKMALRSQSFNERRTVVPFTRAQPHSDGDLSDETDDGP 132
++ +A+R++ + RR VP + ++DET P
Sbjct: 392 KHEDLAVRARHSHARRQTVPIGTGRSGYRQGVTDETGHDP 431
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 29.1 bits (62), Expect = 5.3
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 25 PQSPKFSLPLWQPWMPSPEKETPSTASSGESEGDRTLSPETPRSQSKEATGKWRRE 80
P P S P P +P + ST S GD ++P+ + Q++ + RR+
Sbjct: 308 PSVPHQSQPAVPPAFATPPRSGASTPSGAPPTGDEGMAPQPGQGQARPSYMNKRRQ 363
>SB_43422| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1472
Score = 29.1 bits (62), Expect = 5.3
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 21 SMEPPQSPKFSLPLWQPWMPSPEK---ETPSTASSGESEGDRTLSPETPRSQSKEATGKW 77
S E P + FS +P K +TP+T S E+ R S ETP ++ E + +
Sbjct: 518 SSEKPTTRPFSETPTSTSSETPTKTFNKTPATRPSSETPTTRP-SSETPTTKPPEIS--F 574
Query: 78 RRERRSIRLPEY 89
R RRS+ P Y
Sbjct: 575 GRRRRSVATPTY 586
>SB_58267| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.5)
Length = 722
Score = 28.7 bits (61), Expect = 7.0
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 36 QPWMPSPEKETPSTASSGESEGDRTLSPETPRSQSKEATGKWRRERRSIRLPEYRP-KEN 94
QP +P SS ESE T S T ++++ A + R+R P +++
Sbjct: 64 QPTTIQANNTSPEDVSSSESETADTSSSNTSQARNTNAQNQPERKREPWNSPPQETIRDS 123
Query: 95 GKMALRSQSFNERR 108
K +L S+S + R
Sbjct: 124 SKSSLVSRSEGQMR 137
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 28.7 bits (61), Expect = 7.0
Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 1/98 (1%)
Query: 41 SPEKETPSTASSGESEGDRTLSPETPRSQSKEATGKWRRERRSIRLPEYRPKENGKMALR 100
+P TP T S+ + T +P T + + A + R P G
Sbjct: 81 APSTSTPRTGSTTTTSAPSTSTPRTGSTTTTSAPSTSTTSNSTTRAPSTSTPRTGSTITL 140
Query: 101 SQSFNERRTVVPFTRAQPHSDGDLSDETDDGPANLTVN 138
S T P T + + G + +D +N+T +
Sbjct: 141 RTSTTSVMTTTPSTTSISRA-GSTTTTSDPSTSNITTS 177
>SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 931
Score = 28.7 bits (61), Expect = 7.0
Identities = 24/113 (21%), Positives = 40/113 (35%)
Query: 44 KETPSTASSGESEGDRTLSPETPRSQSKEATGKWRRERRSIRLPEYRPKENGKMALRSQS 103
K ST + E DR SP R + + R R + ++ K RS
Sbjct: 811 KRGSSTILTRERHSDRDRSPRRERDRERRERDSSSRRHRDKDRDKGSDRDRDKREERSSR 870
Query: 104 FNERRTVVPFTRAQPHSDGDLSDETDDGPANLTVNGKKAPPEYPGSKYEAPID 156
+ R + S+ +D ++G +++ E SK EAP +
Sbjct: 871 RERSKDTREKKRHKGSSEAPSTDGQEEGELVSKKRSRRSREEKKESKSEAPAE 923
>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
Length = 909
Score = 28.7 bits (61), Expect = 7.0
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 256 VDDHFAKALGDTWRQLQTSKSKENEKTQL-----NHKGGVDDHFSKALGETWQKIQSSKH 310
+ D A A+ L+ ++ K NE L H G+D FSKA+G+ Q++
Sbjct: 684 LQDAKAAAIRKDELHLKEAQEKYNEVKILLSESKKHLHGIDVRFSKAVGQHEQELLRLSQ 743
Query: 311 NLNSDNEKKDQ 321
NL D + Q
Sbjct: 744 NLEQDLASRGQ 754
>SB_26383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1142
Score = 28.7 bits (61), Expect = 7.0
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 275 KSKENEKTQLNHKGGVDDHFSKALGETWQKIQSSKHNLNSDNEKKDQTTKIITRS 329
+SK EK +L +G GET K + + +S EKK +T K+I ++
Sbjct: 537 ESKTEEKEKLEGEGQAIPEKEPKEGETMAKEEDKERKDDSKVEKKSRTLKMIKQT 591
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 28.7 bits (61), Expect = 7.0
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 41 SPEKETPSTASSGESEGDRTLSPETPRSQSKEATGKWRRERRSIRLPEYRPKENGKMALR 100
SP E S + SG E R+ S R + + + +RER S P++R NG R
Sbjct: 132 SPSLERRSRSRSGSRERRRSPSRSPERRRERSFSNSPKRERHS---PDHR---NGNEGTR 185
Query: 101 SQSFNERRTVVPFTRAQPHSD 121
+S + R+ P +A P D
Sbjct: 186 DRS--QSRSPTP-AKADPQHD 203
>SB_45602| Best HMM Match : Ribosomal_S30AE (HMM E-Value=8)
Length = 340
Score = 28.7 bits (61), Expect = 7.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 122 GDLSDETDDGPANLTVNGKKAPPE 145
G +SDE+DD L +NG+ AP E
Sbjct: 223 GFVSDESDDVAVTLEINGQPAPEE 246
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 28.7 bits (61), Expect = 7.0
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 269 RQLQTSKSKENEKTQL-NHKGGVDDHFSKALGETWQKIQSSKHNLNSDNEKKDQ 321
R+L + K E + + G+ D K L + KIQS +++L+ NEK +
Sbjct: 648 RELSEANGKNRELEEACENLAGIRDELEKELAGSKLKIQSLENSLDKANEKTSE 701
>SB_3975| Best HMM Match : Sigma70_ECF (HMM E-Value=7.3)
Length = 355
Score = 28.7 bits (61), Expect = 7.0
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 265 GDTWRQLQTSKSKENEKTQLNHKGGVDDHFSKALGETWQKIQS 307
G WR + S+ E +L K GVD + +AL ET++ +S
Sbjct: 140 GSLWRTVLASQEVER---RLGVKSGVDTKYLEALAETYRNAES 179
>SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)
Length = 516
Score = 28.3 bits (60), Expect = 9.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 217 PGPKPNMKDRASSPILFKTEEPP 239
P P+P+ K R+ SP L KT PP
Sbjct: 73 PTPEPSPKHRSPSPKLTKTPTPP 95
>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 213 ENAQPGPKPNMKDRASSPILFKTEEP 238
E A P KP++ AS+P L KTE P
Sbjct: 696 EKANPTNKPSVPTDASTPTLGKTESP 721
>SB_50266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 239
Score = 28.3 bits (60), Expect = 9.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 123 DLSDETDDGPANLTVNGKKAPPEYPGSKYEAPIDM 157
DL+ ++ +LT + + PP+ PGS Y+ P D+
Sbjct: 64 DLATRFNNFLGSLTAHFEPLPPQAPGSFYQVPDDL 98
>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2346
Score = 28.3 bits (60), Expect = 9.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 123 DLSDETDDGPANLTVNGKKAPPEYPGSKYEAPIDM 157
DL+ ++ +LT + + PP+ PGS Y+ P D+
Sbjct: 653 DLATRFNNFLGSLTAHFEPLPPQAPGSFYQVPDDL 687
>SB_38681| Best HMM Match : RVT_1 (HMM E-Value=0.0082)
Length = 559
Score = 28.3 bits (60), Expect = 9.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 123 DLSDETDDGPANLTVNGKKAPPEYPGSKYEAPIDM 157
DL+ ++ +LT + + PP+ PGS Y+ P D+
Sbjct: 112 DLATRFNNFLGSLTAHFEPLPPQAPGSFYQVPDDL 146
>SB_21551| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0016)
Length = 999
Score = 28.3 bits (60), Expect = 9.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 123 DLSDETDDGPANLTVNGKKAPPEYPGSKYEAPIDM 157
DL+ ++ +LT + + PP+ PGS Y+ P D+
Sbjct: 707 DLATRFNNFLGSLTAHFEPLPPQAPGSFYQVPDDL 741
>SB_14992| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 28.3 bits (60), Expect = 9.3
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 221 PNMKDRASSPILFKTEEPPKPT-KIIAMEIDDPSLSVDDHFAKALGDTWRQLQTSKSKEN 279
P K A+ F PP+PT K + LSV+ H ++ T+ Q+ S+S
Sbjct: 7 PQTKCPAALRKNFGGRSPPRPTVKFQQKTVKFHILSVEFHQKRSNSTTFGQIPPSRSNST 66
Query: 280 EKTQLNHKGGV 290
+ + GG+
Sbjct: 67 ILVEFDRNGGI 77
>SB_56504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 28.3 bits (60), Expect = 9.3
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 42 PEKETPSTASSGESEGDRTLSPETPRSQSKEATGKWRRERRSIRLPEYRPKENGKMALRS 101
PE + S A G+ G LSP +P+ SK + + +RS + K +GK L
Sbjct: 120 PEHSSLSPAKLGK--GTSKLSPSSPKVLSKVSDQDTVKSKRSKFQKFTKKKGSGKDTLLK 177
Query: 102 QSFNERR 108
+SF R+
Sbjct: 178 KSFKVRQ 184
>SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 28.3 bits (60), Expect = 9.3
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 40 PSPEKETPSTASSG-ESEGDRTLSPETPRSQSKEATGKWRRERRSIRLPEYRPKENGK-- 96
PS TPS +S+ +SE RS A R ++R + + K+ GK
Sbjct: 350 PSSNSLTPSESSTSIQSEAPMPTEEIDSRSDLLAAI----RHGMALRKVQVQEKKKGKDE 405
Query: 97 MALRSQSFNERRTVVPFTRAQPHSDGDLSDETDD 130
+ S RR V ++ ++ SDG D+ DD
Sbjct: 406 SIMDVASILARRIAVEYSSSEEESDGSEWDDPDD 439
>SB_33858| Best HMM Match : RVT_1 (HMM E-Value=3.7e-21)
Length = 692
Score = 28.3 bits (60), Expect = 9.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 123 DLSDETDDGPANLTVNGKKAPPEYPGSKYEAPIDM 157
DL+ ++ +LT + + PP+ PGS Y+ P D+
Sbjct: 184 DLATRFNNFLGSLTAHFEPLPPQAPGSFYQVPDDL 218
>SB_23978| Best HMM Match : ERF (HMM E-Value=2)
Length = 282
Score = 28.3 bits (60), Expect = 9.3
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 280 EKTQLNHKGGVDDHFSKALGETWQKIQSSKHNLNSDNEKKDQTTKIITRSGV 331
E+ ++N K + F+K + W +QSSK L D+ D+ K + GV
Sbjct: 102 ERIRINGKPLAKNLFAKYFFKCWDNLQSSKLLLIPDDLPLDEYEKSLLAKGV 153
>SB_21388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 28.3 bits (60), Expect = 9.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 123 DLSDETDDGPANLTVNGKKAPPEYPGSKYEAPIDM 157
DL+ ++ +LT + + PP+ PGS Y+ P D+
Sbjct: 11 DLATRFNNFLGSLTAHFEPLPPQAPGSFYQVPDDL 45
>SB_15219| Best HMM Match : DUF646 (HMM E-Value=4.5)
Length = 192
Score = 28.3 bits (60), Expect = 9.3
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 9/72 (12%)
Query: 191 VIDEHFRRSLGDDYMNLFKKNSENAQPGPKPNMKDR---------ASSPILFKTEEPPKP 241
V D R + L K ++E A P P P++ + SSP F P P
Sbjct: 103 VTDPRIDREVRSKAFALAKVHAEGAAPAPSPSLNTKFAMLPTSPGRSSPSFFPIALSPLP 162
Query: 242 TKIIAMEIDDPS 253
T + E D PS
Sbjct: 163 TPLATEESDLPS 174
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 28.3 bits (60), Expect = 9.3
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 47 PSTASSGESEGDRTLSPETPRSQSKEATGKWRRERRSIRLPEYRPKENGKMALRSQSFNE 106
PS A +S D T R EA K RRE R R R K++GK + R +S E
Sbjct: 2132 PSVARRDKSSPDDGPMSST-RIDEDEARAK-RREAREARRSRTRDKDDGKESSRDRSKEE 2189
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.310 0.128 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,616,002
Number of Sequences: 59808
Number of extensions: 575705
Number of successful extensions: 1770
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1716
Number of HSP's gapped (non-prelim): 76
length of query: 333
length of database: 16,821,457
effective HSP length: 82
effective length of query: 251
effective length of database: 11,917,201
effective search space: 2991217451
effective search space used: 2991217451
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 60 (28.3 bits)
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