Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000407-TA|BGIBMGA000407-PA|IPR006627|Protein of unknown
function TDU
(333 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27780.1 68415.m03368 expressed protein 32 0.62
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 31 0.82
At2g38480.1 68415.m04726 integral membrane protein, putative con... 31 0.82
At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative / ... 31 1.1
At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative sim... 31 1.4
At2g22795.1 68415.m02704 expressed protein 30 1.9
At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein ... 30 2.5
At3g60270.1 68416.m06737 uclacyanin, putative similar to uclacya... 30 2.5
At2g37080.1 68415.m04550 myosin heavy chain-related low similari... 30 2.5
At1g22310.2 68414.m02792 DNA-binding protein-related contains Pf... 30 2.5
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 30 2.5
At3g60160.1 68416.m06717 ABC transporter family protein similar ... 29 3.3
At3g06010.1 68416.m00686 homeotic gene regulator, putative simil... 29 3.3
At1g51080.1 68414.m05742 expressed protein 29 3.3
At5g37350.2 68418.m04487 RIO1 family protein similar to extragen... 29 4.4
At5g37350.1 68418.m04486 RIO1 family protein similar to extragen... 29 4.4
At3g61415.1 68416.m06878 SKP1 family protein low similarity to S... 29 4.4
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 29 4.4
At2g35670.1 68415.m04375 transcription factor, putative / fertil... 29 4.4
At1g48380.1 68414.m05404 root hair initiation protein root hairl... 29 4.4
At1g17050.1 68414.m02073 geranyl diphosphate synthase, putative ... 29 4.4
At4g34440.1 68417.m04894 protein kinase family protein contains ... 29 5.8
At2g30960.1 68415.m03776 expressed protein 29 5.8
At2g22475.2 68415.m02665 GRAM domain-containing protein / ABA-re... 29 5.8
At2g22475.1 68415.m02666 GRAM domain-containing protein / ABA-re... 29 5.8
At2g13620.1 68415.m01501 cation/hydrogen exchanger, putative (CH... 29 5.8
At1g74650.1 68414.m08645 myb family transcription factor (cY13) ... 29 5.8
At1g65280.1 68414.m07402 DNAJ heat shock N-terminal domain-conta... 29 5.8
At5g25520.2 68418.m03037 transcription elongation factor-related... 28 7.6
At5g25520.1 68418.m03036 transcription elongation factor-related... 28 7.6
At5g22090.1 68418.m02572 expressed protein 28 7.6
At3g28700.1 68416.m03581 expressed protein contains Pfam PF02636... 28 7.6
At2g38160.1 68415.m04684 expressed protein 28 7.6
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 28 7.6
>At2g27780.1 68415.m03368 expressed protein
Length = 368
Score = 31.9 bits (69), Expect = 0.62
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 44 KETPSTASSGESEGDRTLSPETPRSQSKEA--TGKWRRERRSIRLPEYRPKENGKMALRS 101
K T + + E R+L+ ET + +++ + K + + +S E K+ K L+
Sbjct: 161 KTTIKLSELNKKEDQRSLTRETEKIKARNSFLALKQKEDHKSETCDEKYFKKETKTNLKP 220
Query: 102 QSFNERR-TVVPFTRAQPHSDGDLSDET 128
+ RR ++V T +PH DG L +T
Sbjct: 221 LNMKTRRVSLVDVTTKKPHEDGSLIKKT 248
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 31.5 bits (68), Expect = 0.82
Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 9/138 (6%)
Query: 21 SMEPPQSPKFSLPLWQPWMPSPEKETPSTASSG----ESEGDRTLSPETPRSQSKEATGK 76
++E P PK +P PSP+ ETPS S + E + SP+T + + K + K
Sbjct: 428 NLEEPSKPKPEESP-KPQQPSPKPETPSHEPSNPKEPKPESPKQESPKTEQPKPKPESPK 486
Query: 77 WRRERRSIRLPEYRPKENGKMALRSQSFNERRTVVPFTRAQPHSDGDLSDETDDGPANLT 136
++ PE +PK K Q +++ P +P P T
Sbjct: 487 QESPKQEAPKPE-QPKP--KPESPKQESSKQEPPKPEESPKPEPPKPEESPKPQPPKQET 543
Query: 137 VNGKKAPPEYPGSKYEAP 154
+++P P K E P
Sbjct: 544 PKPEESPKPQP-PKQETP 560
>At2g38480.1 68415.m04726 integral membrane protein, putative
contains 4 transmembrane domains; contains plant
integral membrane protein domain, TIGR01569 and
PF04535;: Domain of unknown function (DUF588);
At3g16300, At1g45222 both share this domain structure;
distantly related to GP|14030504 salicylic acid-induced
fragment 1 protein {Gossypium hirsutum}; similar to
putative ethylene responsive element binding protein
(GI:22135858) [Arabidopsis thaliana]
Length = 188
Score = 31.5 bits (68), Expect = 0.82
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 39 MPSPEKETPSTASSGESEGDRTLSPETPRSQSKEATGKWRRE 80
M +P+ P A+ ES ++T P TP S + T +W+RE
Sbjct: 1 MTNPDNMKPVEATDVESAAEKTSEP-TPASGTSTITQRWKRE 41
>At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative /
eEF-1B gamma, putative Similar to elongation factor
1-gamma (gb|EF1G_XENLA). ESTs
gb|T20564,gb|T45940,gb|T04527 come from this gene
Length = 414
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 209 KKNSENAQPGPKPNMKDR--ASSPILFKTEEPPKPTKIIAMEIDDPSLSVDDHFAKALGD 266
KK ++ A+P +P K+ A +P L + EE PKP +++ PS V D + + +
Sbjct: 218 KKAAQPAKPKEEPKKKEAPVAEAPKLAEEEEAPKPKAKNPLDLLPPSPMVLDDWKRLYSN 277
Query: 267 T 267
T
Sbjct: 278 T 278
>At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 1299
Score = 30.7 bits (66), Expect = 1.4
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 6/136 (4%)
Query: 18 HLLSMEPPQSPKFSLPLWQPWMPSPEKETPSTASSGESEGDRTLSPETPRSQSKEA-TGK 76
H +M P ++ S+P Q + K T +T SG+ + ++P +Q + A TGK
Sbjct: 1163 HNYNMAPTEAA--SIPRQQNYKQRNPKATNNT-DSGKKKEKMFVNPTNRINQPEAASTGK 1219
Query: 77 WRRERRSIRLPEYRPKENGKMALRSQSFNERRTVVPFTRAQPHSDGDLSDETDDGPANLT 136
+ + + KEN M N++ VP A P + S +T N +
Sbjct: 1220 PSKHKSANSSGSSNKKEN--MPSDQAYGNKQHNTVPREAAAPMAKNQSSKKTKTRSGNNS 1277
Query: 137 VNGKKAPPEYPGSKYE 152
+GKK P + E
Sbjct: 1278 DSGKKKEQYIPKRQRE 1293
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 272 QTSKSKENEKTQLNHKGGVDDHFSKALGETWQKIQSSKH----NLNSDNEKKDQ 321
+ +K KENEK + ++ K ET +K +SS + N+N+++EKK+Q
Sbjct: 594 EETKEKENEKIEKEESASQEETKEKET-ETKEKEESSSNESQENVNTESEKKEQ 646
>At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 812
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 211 NSENAQPGPKPNMKDRASSPILFKTEEPPKPTKIIAMEIDDPSLSVDDHFAKALGDTWRQ 270
N+ + K N + A S K + K K A+++ DP ++ D+F DT R+
Sbjct: 649 NASLREEDSKDNGRSAAQSSSQPKESQSSKKNKGKAVKVVDPKETLADNFM----DTVRR 704
Query: 271 LQTSKSKENEKTQ 283
LQ+S++ + E+ +
Sbjct: 705 LQSSQNPQEEEEE 717
>At3g60270.1 68416.m06737 uclacyanin, putative similar to uclacyanin
3 GI:3395770 from [Arabidopsis thaliana]; contains Pfam
profile PF02298: Plastocyanin-like domain
Length = 187
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 4 PHHLLLLAQTSLR-LHLLSMEPPQSPKFSLPLWQPWMPSPEKETPS-TASSGESE 56
P H L + +++ L +S+EPP SP S P P PSP PS + S G +E
Sbjct: 107 PGHCSLGMKLAVQVLAAVSLEPPPSP--SAPSPSPSAPSPSPSAPSPSPSPGNAE 159
>At2g37080.1 68415.m04550 myosin heavy chain-related low similarity
to myosin heavy chain [Rana catesbeiana] GI:4249701
Length = 583
Score = 29.9 bits (64), Expect = 2.5
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Query: 22 MEPPQSPKFSLPLWQPWMPSPEKETPSTASSGE-SEGDRTLSPETPRSQSKEATGKWRRE 80
M+ P+ SL + Q P+ TP TA + SE D SP T K + K +
Sbjct: 1 MQTPKPRPGSLEVPQKKSPA---STPKTARKLKTSESDPVSSPNTKIRTPKTQSPKVVAD 57
Query: 81 RRSIRLP--EYRPKENGKMALRSQSFNERRTVVPFTRAQPHSDGDLSDETDD 130
RRS R P E + K GK + ++ + + + Q + L E D
Sbjct: 58 RRSPRTPVNEIQKKRTGKTPELASQISQLQEELKKAKEQLSASEALKKEAQD 109
>At1g22310.2 68414.m02792 DNA-binding protein-related contains Pfam
profiles PF02178: AT hook motif, PF01429: Methyl-CpG
binding domain
Length = 524
Score = 29.9 bits (64), Expect = 2.5
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 41 SPEKETPSTASSGESEGDRTLSPETPRSQSKEATGKWRRERRSIRLPEY-RPKEN--GKM 97
SP AS+G GD L+P+ RS E+ G ++ +RL + +P E
Sbjct: 49 SPSSSASLAASAG---GDDDLTPKIDRSVFNESAGSRKQTFLRLRLARHPQPPEEPPSPQ 105
Query: 98 ALRSQSFNERRT-VVPFTRAQPHSDGDLS-DETDDGPANLTVN 138
R S E +T V R+ + D + S +E D+G L N
Sbjct: 106 RQRDDSSREEQTQVASLLRSLFNVDSNQSKEEEDEGEEELEDN 148
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439: Bromodomain
Length = 1210
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 39 MPSPEKETPSTASSGESEGDRTLSPETPRSQSKEATGK 76
MPSP+ P +A+ ++GDR E P SKEA+ +
Sbjct: 1091 MPSPDAANPQSAAPSPTDGDREDQSEPP---SKEASAE 1125
>At3g60160.1 68416.m06717 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]
Length = 1490
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 280 EKTQLNHKGGVDDHFSKALGETWQKIQSSKHNLNSDNEKKD 320
EK+ N K G D + ++ E+ Q S+HN++++N+KK+
Sbjct: 865 EKSSRNFKEGSKDD-TASIAESLQTHCDSEHNISTENKKKE 904
>At3g06010.1 68416.m00686 homeotic gene regulator, putative similar to
SP|P25439 Homeotic gene regulator (Brahma protein)
{Drosophila melanogaster}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1132
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 45 ETPSTASSGESEGDRTLSPETPRSQSKEATGKWRRERRSIRLPEYRPKENGKMALRSQSF 104
E+ T S G SE D E ++KE +GK R ++ E + +GK + +
Sbjct: 1049 ESIQTVSDGTSEEDEE---EQEEERAKEMSGKQRVDKSEEEEEEGEEENDGKAIFKWNTH 1105
Query: 105 NERRTVVPFTRAQPHSDGDLSD 126
++R+ FT + S S+
Sbjct: 1106 KKKRSRYSFTCSSSDSRAQSSN 1127
>At1g51080.1 68414.m05742 expressed protein
Length = 285
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 54 ESEGDRTLSPETPRSQSKEATGKWRRERRSIRLPEYRPKENGKMALRSQ 102
E G+ E + + +E WRR++R R+ + +++GK RS+
Sbjct: 197 EERGEMVRRREIKKKEEEEDENGWRRKQRRERMRQSLGRDDGKTVNRSE 245
>At5g37350.2 68418.m04487 RIO1 family protein similar to extragenic
suppressor of the bimD6 mutation (SUDD) [Emericella
nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
GI:1359602; contains Pfam profile PF01163: RIO1 family
Length = 385
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 43 EKETPSTASSGESEGDRTLSPETPRSQSKEATGKWRRERRSIR 85
E+E + E E ++ L PE ++ KE K + E+R R
Sbjct: 321 EEEEEGSGEESEEESEKELGPEDKKAARKEHKKKVKEEKRESR 363
>At5g37350.1 68418.m04486 RIO1 family protein similar to extragenic
suppressor of the bimD6 mutation (SUDD) [Emericella
nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
GI:1359602; contains Pfam profile PF01163: RIO1 family
Length = 531
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 43 EKETPSTASSGESEGDRTLSPETPRSQSKEATGKWRRERRSIR 85
E+E + E E ++ L PE ++ KE K + E+R R
Sbjct: 467 EEEEEGSGEESEEESEKELGPEDKKAARKEHKKKVKEEKRESR 509
>At3g61415.1 68416.m06878 SKP1 family protein low similarity to
SP|P52285 Glycoprotein FP21 precursor {Dictyostelium
discoideum}; contains Pfam profile PF01466: Skp1 family,
dimerisation domain
Length = 351
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 234 KTEEPPKPTKIIAMEIDD--PSLSVDDHFAKALGDTWRQLQTSKSKENEKTQLNHKGGVD 291
K +E + K+ ++E+++ SVDD + G + ++TSKSK+ K + K G
Sbjct: 177 KRKELKEREKLKSVEVEEHVDERSVDDLLSFINGRDPKVVKTSKSKKKNKKRKEQKNGSS 236
Query: 292 DHFSKALGETWQKIQSSKHN 311
+ +AL + + S +
Sbjct: 237 NGTCEALEKDLHNLDSKSQS 256
>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
protein similar to SP|P42731 Polyadenylate-binding
protein 2 (Poly(A) binding protein 2) (PABP 2)
{Arabidopsis thaliana}; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 423
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 24 PPQSPKFSLPLWQPWMPSPEKETPSTASSGESEGDRTLSPET 65
P S +LP +Q ++P E ETP + E LSP+T
Sbjct: 97 PKLSSSLTLPTYQDFLPRQEDETPPADFAEEVLFVANLSPQT 138
>At2g35670.1 68415.m04375 transcription factor, putative /
fertilization-independent seed 2 protein (FIS2)
identical to GB:AF096095
Length = 632
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/84 (25%), Positives = 36/84 (42%)
Query: 47 PSTASSGESEGDRTLSPETPRSQSKEATGKWRRERRSIRLPEYRPKENGKMALRSQSFNE 106
PS + S+ + T ++++ + K R R L R + L+ + F
Sbjct: 428 PSPPKTRSSKKTSNILATTQPAKAEPSEPKVTRVSRRKELHAERCEAKRLERLKGRQFYH 487
Query: 107 RRTVVPFTRAQPHSDGDLSDETDD 130
+T+ P T Q S+ D +ETDD
Sbjct: 488 SQTMQPITFEQVMSNEDSENETDD 511
>At1g48380.1 68414.m05404 root hair initiation protein root hairless
1 (RHL1)
Length = 355
Score = 29.1 bits (62), Expect = 4.4
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 45 ETPSTASSGESEGDRTLSPETPRSQSKEATGKWRRERR--------SIRLPEYRPKENGK 96
ET S ASSGESEG+ + E P + + +T + R E + + +LPE P + K
Sbjct: 261 ETSSEASSGESEGNTSDEDEKPLLEPESST-RSREESQDGNGITASASKLPEELPAKREK 319
Query: 97 MALRSQSFNERRTVVPFTRAQPHSDG 122
+ + + F +A+ + G
Sbjct: 320 LKSKDSKLVQATLSNLFKKAEEKTAG 345
>At1g17050.1 68414.m02073 geranyl diphosphate synthase, putative /
GPPS, putative / dimethylallyltransferase, putative /
prenyl transferase, putative similar to GI:11322965;
Except for first 55 amino acids, 52% identical to Prenyl
transferase (Cyanophora paradoxa) (gi 99282). Location
of est 120E9T7 (gb|T43950)
Length = 417
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 202 DDYMNLFKKNSENAQPGPKPNMKDRASSPILFKTEEPPKPTKIIAMEIDDP 252
DD ++ + + +P K ++P++F E P+ +II E +P
Sbjct: 309 DDILDFTQSTEQLGKPAANDLAKGNITAPVIFALENEPRLREIIESEFCEP 359
>At4g34440.1 68417.m04894 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 670
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 24 PPQSPKFSLPLWQPWMPSPEKETPSTASSGESEGDRTLS----PETPRSQSKE 72
PP SP S P+ + +P +TP S EG ++ P+TP +QS E
Sbjct: 68 PPTSPSSSPPV----VANPSPQTPENPSPPAPEGSTPVTPPAPPQTPSNQSPE 116
>At2g30960.1 68415.m03776 expressed protein
Length = 260
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 43 EKETPSTASSGESEGDRTLSPETPRSQSKEATGKWRRERRS 83
EKE P + ES G + P+ + K+ G WR+ S
Sbjct: 97 EKEKPEVTVAIESGGGEDAADGLPKKKKKKNKGAWRKRYNS 137
>At2g22475.2 68415.m02665 GRAM domain-containing protein /
ABA-responsive protein-related similar to ABA-responsive
protein [Hordeum vulgare] GI:4103635; contains Pfam
profile PF02893: GRAM domain
Length = 248
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 237 EPPKPTKIIAMEID--DPSLSVDDHFAKALGDTWRQLQTSKSKENE 280
EPPK ++ E+ DPSLSV D K + D ++ S E E
Sbjct: 2 EPPKGDTVVKTEVPVKDPSLSVVDSKTKGVEDANTEIALSDEVEIE 47
>At2g22475.1 68415.m02666 GRAM domain-containing protein /
ABA-responsive protein-related similar to ABA-responsive
protein [Hordeum vulgare] GI:4103635; contains Pfam
profile PF02893: GRAM domain
Length = 299
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 237 EPPKPTKIIAMEID--DPSLSVDDHFAKALGDTWRQLQTSKSKENE 280
EPPK ++ E+ DPSLSV D K + D ++ S E E
Sbjct: 2 EPPKGDTVVKTEVPVKDPSLSVVDSKTKGVEDANTEIALSDEVEIE 47
>At2g13620.1 68415.m01501 cation/hydrogen exchanger, putative
(CHX15) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 821
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 190 PVIDEHFRRSLGDDYMNLFKKNSENAQ 216
P +D +R L DDY+NLF+ +ENA+
Sbjct: 685 PKMDHRKQRQLDDDYINLFR--AENAE 709
>At1g74650.1 68414.m08645 myb family transcription factor (cY13)
similar to myb protein cY13 GI:928930 from [Arabidopsis
thaliana]; contains Pfam profile: PF00249 myb
DNA-binding domain; identical to cDNA cY13 gene
GI:928929
Length = 330
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 203 DYMNLFKKNSENAQPGPKPNMKDRASSPILFKTEEPPKPTKIIAMEIDDPSLSVDDHFAK 262
D+ +LF NSE+ K N+ S +FK E P I ME + + DD +
Sbjct: 246 DHHSLFSSNSESGSVDEKLNLMSETS---MFKGESKPD----IDMEATPTTTTTDDQGSL 298
Query: 263 ALGDTW 268
+L + W
Sbjct: 299 SLIEKW 304
>At1g65280.1 68414.m07402 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 598
Score = 28.7 bits (61), Expect = 5.8
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 40 PSPEKETPSTASSGESEGDRTLSPETPRSQSKEATGKWRRERRSIRLPEYR-----PKEN 94
PS + S+ SS ES+ + + + K G + RE+R R E + KE
Sbjct: 16 PSSATSSSSSYSSDESDSSSRKWRKKQKERRKSDGGSYEREKRRKREKERKRKKIERKER 75
Query: 95 GKMALRSQSFNERRTVVPFTRAQPHSDGDLSDETDD 130
+ ++ + ++R T + SD SD+ DD
Sbjct: 76 KRRDMKKKKKTKKREYESDTESYSGSD-SFSDQEDD 110
>At5g25520.2 68418.m03037 transcription elongation factor-related
contains weak similarity to transcription elongation
factors
Length = 997
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 33 PLWQPWMPSPEKETPSTASSGESEGDRTLSP-----ETPRSQSKEATGKWRRERRSIRLP 87
P P P KE P++ S +G + SP ++P+ S+ + K E+ ++ P
Sbjct: 567 PFGSPHEHPPGKEDPASEKSDSKDGSHSKSPSRSPKQSPKEPSESVSSKTELEKTNVISP 626
Query: 88 E 88
+
Sbjct: 627 K 627
>At5g25520.1 68418.m03036 transcription elongation factor-related
contains weak similarity to transcription elongation
factors
Length = 735
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 33 PLWQPWMPSPEKETPSTASSGESEGDRTLSP-----ETPRSQSKEATGKWRRERRSIRLP 87
P P P KE P++ S +G + SP ++P+ S+ + K E+ ++ P
Sbjct: 567 PFGSPHEHPPGKEDPASEKSDSKDGSHSKSPSRSPKQSPKEPSESVSSKTELEKTNVISP 626
Query: 88 E 88
+
Sbjct: 627 K 627
>At5g22090.1 68418.m02572 expressed protein
Length = 463
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 224 KDRASSPILFKTEEPPKPTKIIAMEIDDPSLSVDDHFAKALGDT----WRQLQTSKSKEN 279
K S+P++ PP+P P +VDD A +T W+ T N
Sbjct: 366 KSDLSTPVVHSL--PPRPRVAQLARSTKPPSTVDDTVGAACFNTCDYSWKSTNTESFGPN 423
Query: 280 EKTQLNHKGGVDDHFSKALGETW 302
KTQ + V+ K++G+ W
Sbjct: 424 TKTQFQAQNFVN----KSMGDGW 442
>At3g28700.1 68416.m03581 expressed protein contains Pfam PF02636:
Uncharacterized ACR, COG1565
Length = 471
Score = 28.3 bits (60), Expect = 7.6
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 9 LLAQTSLRLHLLSMEPPQSPKFSLPLWQPWMPSPE---KETPSTASSGESEGDRTLSPET 65
LL QTS R L S PP K ++ + SPE E+P+ G + S T
Sbjct: 5 LLTQTSSRRLLFSGVPPLFSKSTISPFSSLSSSPEPPSSESPAVEHPGTTISIDRSSLYT 64
Query: 66 PRSQSKEAT 74
P S E+T
Sbjct: 65 PPDHSHEST 73
>At2g38160.1 68415.m04684 expressed protein
Length = 299
Score = 28.3 bits (60), Expect = 7.6
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 19 LLSMEPPQSPKFSLPLWQPWMPSPE--KETPSTASSGESEGDRTLSPETPRSQSKEATGK 76
++ ++ P++ +L +P S + K TP T SS ++ + P S++AT
Sbjct: 95 MVKLKEPKAKSTALKQREPLTRSVKVSKPTPRTVSSKQANTAAEVKPSI--KPSRQATPT 152
Query: 77 WRRERRSIRLPEYRPKENGKMALRSQSFNERRTVVP 112
R S RL K N + S N R + P
Sbjct: 153 SRATLPSTRLTNSAQKSNSESITTSIKSNTRASAFP 188
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 24 PPQSPKFSLPLWQPWMPSPEKETP 47
PP P +S PL P M SP +TP
Sbjct: 661 PPPPPVYSPPLLPPKMSSPPTQTP 684
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.310 0.128 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,860,024
Number of Sequences: 28952
Number of extensions: 409428
Number of successful extensions: 1241
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1214
Number of HSP's gapped (non-prelim): 47
length of query: 333
length of database: 12,070,560
effective HSP length: 81
effective length of query: 252
effective length of database: 9,725,448
effective search space: 2450812896
effective search space used: 2450812896
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 60 (28.3 bits)
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