GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000407-TA|BGIBMGA000407-PA|IPR006627|Protein of unknown
function TDU
         (333 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      30   0.021
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      30   0.021
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   3.1  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            23   3.1  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   3.1  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   9.5  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 30.3 bits (65), Expect = 0.021
 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 8/108 (7%)

Query: 217 PGPKPNMKDRASSPILFKTEEPP----KPTKIIAMEIDDPSLSVDDHFAKALGDTWRQLQ 272
           PGPK  + D    P+    ++ P     P  I+  +++       D   K   +  + L 
Sbjct: 252 PGPKQELPDLNHKPLNLTIKKMPIAIVAPFTIVEPKLNKHEDLPQDLSMKLSKNNDQCLD 311

Query: 273 TSKSKEN--EKTQLNHKGGVDDHFSKALGETWQKIQSSKHNLNSDNEK 318
            SK+KE   EK+ LNH   +  +  K   ET  K   SK+  N    K
Sbjct: 312 LSKTKETNLEKSNLNHNEQLRKYLCKNEDET--KNHYSKNTYNEQGNK 357


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 30.3 bits (65), Expect = 0.021
 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 8/108 (7%)

Query: 217 PGPKPNMKDRASSPILFKTEEPP----KPTKIIAMEIDDPSLSVDDHFAKALGDTWRQLQ 272
           PGPK  + D    P+    ++ P     P  I+  +++       D   K   +  + L 
Sbjct: 144 PGPKQELPDLNHKPLNLTIKKMPIAIVAPFTIVEPKLNKHEDLPQDLSMKLSKNNDQCLD 203

Query: 273 TSKSKEN--EKTQLNHKGGVDDHFSKALGETWQKIQSSKHNLNSDNEK 318
            SK+KE   EK+ LNH   +  +  K   ET  K   SK+  N    K
Sbjct: 204 LSKTKETNLEKSNLNHNEQLRKYLCKNEDET--KNHYSKNTYNEQGNK 249


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 141 KAPPEYPGSKYEAPI 155
           KAP  Y G  +EAPI
Sbjct: 396 KAPSPYGGQMFEAPI 410


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 47  PSTASSGESEGDRTLSPETPRSQSKEATGK--WRRERRSIRLPEYRPKENGKMALRSQSF 104
           P    +G  + D  +  +T RS S EA G   W         P   P E       +   
Sbjct: 6   PLRMPTGHLDDDDFVVVKT-RSNSPEAGGGGFWLAAASGAPHPAALPIEGCN---ETGFI 61

Query: 105 NERRTVVPFTRAQPHSDGDLSDETDDGPAN 134
           N + ++  F  A PH  GD++      P N
Sbjct: 62  NSQPSMAEFMTALPHLSGDMTHGASISPQN 91


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 47  PSTASSGESEGDRTLSPETPRSQSKEATGK--WRRERRSIRLPEYRPKENGKMALRSQSF 104
           P    +G  + D  +  +T RS S EA G   W         P   P E       +   
Sbjct: 6   PLRMPTGHLDDDDFVVVKT-RSNSPEAGGGGFWLAAASGAPHPAALPIEGCN---ETGFI 61

Query: 105 NERRTVVPFTRAQPHSDGDLSDETDDGPAN 134
           N + ++  F  A PH  GD++      P N
Sbjct: 62  NSQPSMAEFMTALPHLSGDMTHGASISPQN 91


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 111 VPFTRAQPHSDGDLSDETDDGPANLTVNGKKAPPEYPGSKYEA 153
           +P+ R  P+   D+ D          ++G++  P+ P S + A
Sbjct: 79  MPYPRFPPYDRMDIRDRRSLHGPQQQMDGQEYRPDSPSSMHMA 121


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.310    0.128    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,360
Number of Sequences: 317
Number of extensions: 3687
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 6
length of query: 333
length of database: 114,650
effective HSP length: 57
effective length of query: 276
effective length of database: 96,581
effective search space: 26656356
effective search space used: 26656356
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 43 (21.4 bits)