GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000407-TA|BGIBMGA000407-PA|IPR006627|Protein of unknown
function TDU
         (333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    32   0.13 
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    31   0.17 
SPBC12D12.02c |cdm1||DNA polymerase delta subunit Cdm1|Schizosac...    28   1.6  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    28   1.6  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    28   1.6  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    27   2.8  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    27   2.8  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    27   2.8  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    27   3.7  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    27   3.7  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    27   3.7  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   4.9  
SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces pom...    26   6.5  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    26   6.5  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    26   6.5  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    26   8.6  
SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       26   8.6  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    26   8.6  

>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 15/31 (48%), Positives = 23/31 (74%), Gaps = 1/31 (3%)

Query: 39  MPSPEKETPSTASSGESEGDRTLSPETPRSQ 69
           +P+P++ TPS+ASS  SE   T SP++ R+Q
Sbjct: 162 LPAPDRHTPSSASSRASE-TGTTSPQSMRNQ 191


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 45  ETPSTASSGESEGDRTLSPETPRSQSKEATGKWRRERRSIRLPEYRPKENGKMALRSQ 102
           ++ S+A  G+  G    +PE  R++ K+ T + + E+R  ++P+Y  K   K + R +
Sbjct: 465 DSKSSAKQGKGNGRAKETPEEKRARKKK-TKEDKAEKRKSKIPKYEKKRKLKQSGRKK 521


>SPBC12D12.02c |cdm1||DNA polymerase delta subunit
           Cdm1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/44 (25%), Positives = 20/44 (45%)

Query: 235 TEEPPKPTKIIAMEIDDPSLSVDDHFAKALGDTWRQLQTSKSKE 278
           +E+ P P   I  +  D  +  DD  +K + + W Q+   +  E
Sbjct: 40  SEQSPTPDVTITTKTLDERIKEDDELSKEVEEAWNQIMAERISE 83


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 25  PQSPKFSLPLWQPWMPSPEKETPSTASSGESEGDRTLSPETPRSQSKEATGKWRR 79
           P  P  +  L    +P   K+  STA+ G      T SP  P S+SK+    W R
Sbjct: 641 PNKPSKNNILKSTQVPVTPKQKSSTANKGS-----TSSPSPPSSESKKTKRSWGR 690


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 41  SPEKETPSTASSGESEGDRTLSPETPRSQSKEATGKWRRERRS 83
           S   E+ S +SS ES+ D   S   P+S S  +T   R    S
Sbjct: 86  SSHDESDSMSSSSESDSDSVSSESNPKSYSDSSTSSARSSSTS 128


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 60  TLSPETPRSQSKEATGKWRRERRSIRLPEYRPKENGKMALRSQSFNERRTVVPFTRAQPH 119
           +L+ E  +++++EA  K + E+R + L      +N     R Q   ++  + P   +   
Sbjct: 104 SLTAERVKNRTQEAQ-KEKEEKRIVTLQNDGGSKN--TTARKQKQLKKNGLRPLNTSASR 160

Query: 120 SDGDLSDETDDGPANLTVNGKKAPPEYPGSKYEAP-IDMR 158
             G  S  T+    NL V+   A P Y G K  A  ID+R
Sbjct: 161 I-GLSSSPTNTPSPNLPVSQPSASPHYSGDKNSAKGIDLR 199


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 37   PWMPSPEKETPS----TASSGESEGDRTLSPETPRSQSKEATGKWRRERRSIRLPEYRPK 92
            P++P+PE    +    +  +G +E + + S  +    SK+      R  + +R    R +
Sbjct: 946  PFIPAPETPLDTAYFDSRGAGAAESNMSSSVNSGEEVSKDNNVSQERGSQFLRSSHGRSR 1005

Query: 93   ENGKMALRSQSFNERRTVVPFTRAQPHSDGDLS 125
            E    A RS+ F+E  +   F    P S  +LS
Sbjct: 1006 ERSTSARRSRRFSEANS--EFDEFGPFSYKNLS 1036


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 209 KKNSENAQPGPKPNMKDRASSPILFKTEEPPKPTKIIAMEIDDPSLSVDDHFAKALGDTW 268
           KK  E A+  PK + K + +SP+    E+     K +  ++D P+L    +  KA+   W
Sbjct: 50  KKAKEEARK-PKLDKKAKIASPVAEYVEKTTPGEKKVLQDLDSPALK--SYNPKAVESAW 106


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 209 KKNSENAQPGPKPNMKDRASSPILFKTEE 237
           KKNS++   G   N KD  ++P LF+TEE
Sbjct: 584 KKNSKSRVVGNTENSKDEFNNP-LFETEE 611


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 385

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)

Query: 51 SSGESEGDRTLSPETPRSQS 70
          SSG SE   T++PETP S S
Sbjct: 38 SSGSSEFTSTITPETPSSSS 57


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 300

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 24 PPQSPKFSLPLWQPWMPSPEKE---TPSTASSGESEGDRTLSPET-PRSQSKEATG--KW 77
          PP+S  FS      +   P          A +  S    + SPE+   SQS ++     +
Sbjct: 19 PPESHTFSSQTDDSYFHKPSSTGLFATLVADTNSSVPSASRSPESIASSQSNDSAAIPSY 78

Query: 78 RRERRSIRLPE 88
          RR+RR +R PE
Sbjct: 79 RRKRRKVRKPE 89


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 209 KKNSENAQPGPKPNMKDRASSPILFKTEEPPKPTKIIAMEIDDPSLS 255
           K+ S+  +P P P      S P  F++  P K   +   E   PS+S
Sbjct: 232 KEKSQENKPKPTPFGSGGPSKPTPFESHGPAKQISVQPSEHPKPSIS 278


>SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 79

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 273 TSKSKENEKTQLN-HKGGVDDHFSKALGETWQKIQSSKHNLNSDNEKKDQ 321
           + ++K+ EK  L  H+G V +   K  G      +++ HN N   E K +
Sbjct: 21  SEETKQREKEYLEEHEGEVGEEHQKNTGNVRGGYKAAMHNPNVSGEAKQR 70


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 42  PEKETPSTASSGESEGDRTLSPETP--RSQSKEATGKWRRERRSIRLPEYRPKENG 95
           P+K      +   +E +    PE P  R ++K+   + ++ER  +R  + + K+ G
Sbjct: 149 PKKGKKGKKAQNNNESEAAAPPEIPEVRVKTKKEKEREKKEREKLRKKQQQAKKKG 204


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 93  ENGKMALRSQSFNERRTVVPFTR-AQPHSDGDLSDETDDGPANLTVNGKKAPPEYPGSKY 151
           E G++ ++SQ     +  +P  R A P S  D  D T  GPA  T+  +K        K 
Sbjct: 449 EPGELGVKSQ----HKISLPEKRSASPSSIDDSQDNTAGGPATTTLIPRKVESSKVSKKR 504

Query: 152 EAP 154
            AP
Sbjct: 505 IAP 507


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 4/107 (3%)

Query: 174 ITKSNDTPPGSMSMCDPVIDEHFRRSLGDDYMNLFKKNSENAQPGPKPNMKDRASSPILF 233
           ++ ++   P S   C+  I  +    L DD+    +++S  A+P P          P+  
Sbjct: 303 VSNNHARSPHSSRACN-TIPSNKNDGLNDDHQ---RQDSSVAEPSPTSKRLRLTRLPLPL 358

Query: 234 KTEEPPKPTKIIAMEIDDPSLSVDDHFAKALGDTWRQLQTSKSKENE 280
             +   K    I + + DPS ++ +   K   +       +++ +NE
Sbjct: 359 LRKPTGKRQNFINITVTDPSKNLYERSVKTAAELASLQNVTETTDNE 405


>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 158

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 78  RRERRSIRLPEYRPKENGKMALRSQSFNERRTVVPFTRAQPH 119
           RR R  +  PE RP+ + +        + ++T +P  R QPH
Sbjct: 66  RRRREDLPTPE-RPEASAQQHAFFPGSSSQQTDIPNVRPQPH 106


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/56 (21%), Positives = 29/56 (51%)

Query: 268 WRQLQTSKSKENEKTQLNHKGGVDDHFSKALGETWQKIQSSKHNLNSDNEKKDQTT 323
           ++++  ++S +N K   +H G   D+  ++LG+  Q  +  +     D  K+++ T
Sbjct: 638 YKRISRNRSTKNVKRDGDHNGDDSDYVIRSLGDVLQSDEDIERWHLYDYTKEEEDT 693


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.128    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,677,352
Number of Sequences: 5004
Number of extensions: 74679
Number of successful extensions: 209
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 197
Number of HSP's gapped (non-prelim): 23
length of query: 333
length of database: 2,362,478
effective HSP length: 73
effective length of query: 260
effective length of database: 1,997,186
effective search space: 519268360
effective search space used: 519268360
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 54 (25.8 bits)