GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000407-TA|BGIBMGA000407-PA|IPR006627|Protein of unknown
function TDU
         (333 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    25   0.92 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   1.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   8.6  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 6/102 (5%)

Query: 23  EPPQSPKFSLPLW--QPWMPSPE--KETPSTASSGESEGDRTLSPETPRSQSKEATGKWR 78
           EP   P  + P++  QP  P P   +E  S A  G +       P  P  + +       
Sbjct: 65  EPKAEPGNNRPIYIPQPRPPHPRLRREAESEAEPGNNRPVYIPQPRPPHPRLRREPEAEP 124

Query: 79  RERRSIRLPEYRPKE-NGKMALRSQSFNERRTVVPFTRAQPH 119
              R + +P+ RP     +    ++  N R   +P  R  PH
Sbjct: 125 GNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPR-PPH 165


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 43  EKETPSTASSGESEGDRTLSPET 65
           +KE  S  + G  +GD  +SP+T
Sbjct: 326 KKENKSKGTPGSGDGDTEISPQT 348


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 187 MCDPVIDEHFRRSLGDDYMNLFKKNSENAQPG 218
           + +P++ EHF+++L  + MN      ++ QPG
Sbjct: 687 LAEPLVKEHFKKAL--ELMNRAVSVPQSHQPG 716


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 192  IDEHFRRSLGDDYMNLFKKNSENAQPGPKP 221
            + EH   S+  DY  L +      QP P P
Sbjct: 1330 LSEHIYSSIDSDYSTLERTAWRQQQPPPPP 1359


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 46   TPSTASSGESEGDRTLSPETPRSQSKEATGKWRRERRSIRL 86
            +PS     +   DR  SP TP S S+  +      R S +L
Sbjct: 1380 SPSDRGRNDDGSDRLTSPPTPLSISRAGSRDEDSTRDSTKL 1420


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 259 HFAKALGDTWRQLQTSKSKENEKTQLNHKGGVDDH 293
           H  + L      L+TSK     K++   KGG+ D+
Sbjct: 159 HIRRTLHMNRTSLKTSKIVSYPKSRSRKKGGLKDN 193


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.128    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,241
Number of Sequences: 429
Number of extensions: 4983
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 6
length of query: 333
length of database: 140,377
effective HSP length: 58
effective length of query: 275
effective length of database: 115,495
effective search space: 31761125
effective search space used: 31761125
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 44 (21.8 bits)